Query= MSMg01no351_e18.b1 MSMg01no351_e18.b1 CHROMAT_FILE:
MSMg01no351_e18.b1 PHD_FILE: MSMg01no351_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:30 2005
(545 letters)
>mm_chr1_134108742_134109686
Length = 945
Score = 994 bits (514), Expect = 0.0
Identities = 535/542 (98%), Gaps = 2/542 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcagtttgtgtcctcctcggaagggcttatagggccaatgaatgtgggtcatg 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 gaattcctcagtttgtgtcctcctcggaatggcttatagggccaatgaatgtgggtcatg 686
Query: 65 tcaacttcaggcttccacatagaggctctgatggctctcttggcagtggaaattgaccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcaacttcaggcttccacatagaggctctgatggctctcttggcagtggaaattgaccca 626
Query: 125 ccttgtaactaggagggtataggtgcagaaaacttacaggttgggggctgtcagggtccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttgtaactaggagggtataggtgcagaaaacttacaggttgggggctgtcagggtccc 566
Query: 185 gggacacatggacacggacagaggaaatgaaaactggacagtttcctcttgtccttacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggacacatggacacggacagaggaaatgaaaactggacagtttcctcttgtccttacag 506
Query: 245 acatttgattgattcctgtagggcaggaacggccgacccatcatcttggagacacagctc 304
|| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ac-tttgattgattcctgtaggacaggaacggccgacccatcatcttgaagacacagctc 447
Query: 305 ccagagctaagagtaaagt-gccaaaaggagagctgctacatgcaagcacacacccctca 363
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 ccagagctaagagtaaagtggccaaaagaagagctgctacatgcaagcacacacccctca 387
Query: 364 aaattcctgacgccaccttccctggtcccaggcttcgcgcacgcgcattaggccgccccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaattcctgacgccaccttccctggtcccaggcttcgcgcacgcgcattaggccgccccc 327
Query: 424 gcgcagcttggttttaaactcgtggcagacggaactcgacttaaaaataactattttgac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 gcgcagcttggttttaaactcgtggcagacggaactcgacttaaaaataactgttttgac 267
Query: 484 agttgcgatgtaaatatgtgagtgacgcgtggggctgtttttccttcgagcttctcccat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agttgcgatgtaaatatgtgagtgacgcgtggggctgtttttccttcgagcttctcccat 207
Query: 544 tc 545
||
Sbjct: 206 tc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_e18.g1 MSMg01no351_e18.g1 CHROMAT_FILE:
MSMg01no351_e18.g1 PHD_FILE: MSMg01no351_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:30 2005
(456 letters)
>mm_chr1_133956372_133957227
Length = 856
Score = 853 bits (441), Expect = 0.0
Identities = 452/456 (99%)
Strand = Plus / Plus
Query: 1 tgcctgataccaagtgctcagagaaatgatctaagacttgtgtgttttaggaccagttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctgataccaagtgctcagagaaatgatctaagacttgtgtgttttaggaccagttta 260
Query: 61 caagctaaggtactgtgttgggggaagaattgggcagcaagaaggttctggaagttgtgg 120
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 261 caagctaaggtactgtgttgggggcagaattgggcagcatgaaggttctggaagttgtgg 320
Query: 121 aagaacatcctcagattatgaaaagggagaggtggggcaagccgacctctgaggttccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaacatcctcagattatgaaaagggagaggtggggcaagccgacctctgaggttccag 380
Query: 181 aacactggaagggaaggagggccgtccccagagatgtggcaggctgtcttttgtcaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacactggaagggaaggagggccgtccccagagatgtggcaggctgtcttttgtcaacac 440
Query: 241 ttgactctggtctcctcggcacatggccatcccatctccttgtatctgattaaagccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgactctggtctcctcggcacatggccatcccatctccttgtatctgattaaagccttt 500
Query: 301 atcagaagagttctgttgatagcagtagttcgttattttgttatttttctcatttccagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagaagagttctgttgatagcagtagttcgttattttgttatttttctcatttccagg 560
Query: 361 ctaatctggttgggggagatttactgttcatgacccctgtctgttccctcttggaacctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaatctggttgggggagatttactgttcatgacccctgtctgttccctcttggaacctg 620
Query: 421 ggggtagacttgcttcaaggnctgacttaataggat 456
|||||||||||||||||||| ||| |||||||||||
Sbjct: 621 ggggtagacttgcttcaaggcctggcttaataggat 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
