BAC Information

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BAC

Clone NameMSMg01-351G10
Chromosome1 (Build37)
Map Location 172,724,524 - 172,725,148
singlet/doubletsinglet
Overlap geneAtf6
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351G10.T7 (MSMg01no351_g10.b1)MSMg01-351G10.TJ (MSMg01no351_g10.g1)
ACCAG462782AG462783
length734743
length of high quality
(start - end)		634 (47 - 680)481 (84 - 564)
definitionCHROMAT_FILE: MSMg01no351_g10.b1 PHD_FILE: MSMg01no351_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:38 2005CHROMAT_FILE: MSMg01no351_g10.g1 PHD_FILE: MSMg01no351_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCACACACATTACGTGCTGCCCAGTAAATAGTAGCTAAGCA
AATGTGAATTACTCTGCCAGCTCTTAGAAACTGAGAGAATGACAGTCCAC
CATATGGTTTATATTTAATTCTTTCTGTTATGTTCATTTCAATCTTACAA
CATGTTTAATTTGGTATATGTTTATTTTAATGAAAACTGACAGTAGTAAG
CTTTATAAAATTTATGATACAAGGAAATGATTTTTGTCTGTCTTTGTTTC
AGCTATGATCACTCTGTGTCCAATGACAAAGCTTTAATGGTGCTAAGTGA
AGAGCCATTGCTTTATATGCCTCCACCTCCATGTCAACCCCTGATTAACA
CAACAGAGTCTCTCAGGTAACGGGTGTGGACTGGTGCAGAAACTACCGAG
TGGCCTCCCATGGCAAACTTCAAACTTAGCAAAGCATTTCTTCAGCTTTA
GTAAGAGGCCAAGAGAATCTGACTTGCATTGGATAACTGCAAGCCAGGAT
AACAATTGTCCAGGTAGCGATGGTGATGGGTCCATTCATTGTGATGGTCA
TCTGCTTAGGTGGGTCTTGTTTGAATGAAAGGATGAAGTGAATGTTAAAA
TTTAGGGTAAGGCTAGACTTGTGGACTTAATATTCTCAGCAGATAATATC
CTTTTTTTTTTTTTTTTTTTAATTAGGAAGGTGA

NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGC
CCCATGTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGT
TCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA
GATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTT
TTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCTATTTGTCAATTCTT
GATTTTACAGCGCAAGCCATTGCTGTTCTATTCAGGAATTTTTCCTCTGT
GCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTG
TCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACTTTAGTA
CAAGGAGATAGGAATGGATCGATTCGCATTCTTCTACATGATAACAACCA
GTTGTGTCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGGATGG
TTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATT
TCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTGTACCA
ATACCATGCAGGTTTTATTCCAATTGCTCTGTAAAAAAGCTTTAAGTCAA
GCATGATGGTTCCACCAGAGGTTCTTTTATCCTTGAGCAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_g10.b1 MSMg01no351_g10.b1 CHROMAT_FILE:
MSMg01no351_g10.b1 PHD_FILE: MSMg01no351_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:38 2005
         (634 letters)



>mm_chr1_172724315_172725348
          Length = 1034

 Score = 1185 bits (613), Expect = 0.0
 Identities = 622/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattcacacacattacgtgctgcccagtaaatagtagctaagcaaatgtgaattactct 69
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaattcacacacagcaggtgctgcccagtaaatagtagctaagcaaatgtgaattactct 775

                                                                       
Query: 70  gccagctcttagaaactgagagaatgacagtccaccatatggtttatatttaattctttc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gccagctcttagaaactgagagaatgacagtccaccatatggtttatatttaattctttc 715

                                                                       
Query: 130 tgttatgttcatttcaatcttacaacatgtttaatttggtatatgtttattttaatgaaa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgttatgttcatttcaatcttacaacatgtttaatttggtatatgtttattttaatgaaa 655

                                                                       
Query: 190 actgacagtagtaagctttataaaatttatgatacaaggaaatgatttttgtctgtcttt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 actgacagtagtaagctttataaaatttatgatacaaggaaatgatttttgtctgtcttt 595

                                                                       
Query: 250 gtttcagctatgatcactctgtgtccaatgacaaagctttaatggtgctaagtgaagagc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtttcagctatgatcactctgtgtccaatgacaaagctttaatggtgctaagtgaagagc 535

                                                                       
Query: 310 cattgctttatatgcctccacctccatgtcaacccctgattaacacaacagagtctctca 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cattgctttatatgcctccacctccatgtcaacccctgattaacacaacagagtctctca 475

                                                                       
Query: 370 ggtaacgggtgtggactggtgcagaaactaccgagtggcctcccatggcaaacttcaaac 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggtaacgggtgtggactggtgcagaaactaccgagtggcctcccatggcaaacttcaaac 415

                                                                       
Query: 430 ttagcaaagcatttcttcagctttagtaagaggccaagagaatctgacttgcattggata 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttagcaaagcatttcttcagctttagtaagaggccaagagaatctgacttgcattggata 355

                                                                       
Query: 490 actgcaagccaggataacaattgtccaggtagcgatggtgatgggtccattcattgtgat 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 actgcaagccaggataacaattgtccaggtagcgatggtgatgggtccattcattgtgat 295

                                                                       
Query: 550 ggtcatctgcttaggtgggtcttgtttgaatgaaaggatgaagtgaatgttaaaatttag 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggtcatctgcttaggtgggtcttgtttgaatgaaaggatgaagtgaatgttaaaatttag 235

                                    
Query: 610 ggtaaggctagacttgtggacttaa 634
           |||||||||||||||||||||||||
Sbjct: 234 ggtaaggctagacttgtggacttaa 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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