Query= MSMg01no351_g16.b1 MSMg01no351_g16.b1 CHROMAT_FILE:
MSMg01no351_g16.b1 PHD_FILE: MSMg01no351_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:39 2005
(591 letters)
>mm_chr1_107300346_107301336
Length = 991
Score = 1096 bits (567), Expect = 0.0
Identities = 582/587 (99%)
Strand = Plus / Plus
Query: 5 gaattcagattgtttaaaggcgagccaggctaatactttttaagagtttgttattgtttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagattgtttaaaggcgagccaggctaatactttttaagagtttgttattgtttt 264
Query: 65 gaattatgagttggatccaagatgattttgaatcttgtgccaacctgaagttattccaaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaattatgagttggatccaagatgattttgaatcttgtgccaacctgaagttattccaat 324
Query: 125 gtgcttactttggcaaaaaatactataatgtctgtcacacagtaggcactcaatactcat 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcttactttggcaaagaatactataatgtctgtcacacagtaggcactcaatactcat 384
Query: 185 gtaatcttactacatatacaatatatttctttacaaagttgaagcaatatgttcttgaag 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 gtaatcttactacatatacaatatatttctttacaaagttgaaacaatatgttcttgaag 444
Query: 245 tatgacacacaggctctttaataaaaccagggcactagacagagtcctaccttgcaatct 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatgacacacaggctctttaagaaaaccagggcactagacagagtcctaccttgcaatct 504
Query: 305 cccacgagtaaatgatttctgcagtatccacagaaacattctggacagatttttttgtac 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 cccacgagtaaatgatttctgcagtattcacagaaacattctggacagatttttttgtac 564
Query: 365 ctggagatagaaaattcagtagtttatctaaagatgtgtcagtaacttgggctatagctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctggagatagaaaattcagtagtttatctaaagatgtgtcagtaacttgggctatagctt 624
Query: 425 agttggtagaatatttggctggattgtagaaggccctgttaataccgaccccaagctccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agttggtagaatatttggctggattgtagaaggccctgttaataccgaccccaagctccc 684
Query: 485 ggaataatgcctctgagactcaattatatttacaaatacctaggatataagctttggctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaataatgcctctgagactcaattatatttacaaatacctaggatataagctttggctg 744
Query: 545 ctctccaataagatcatacctatctatcccatttattctaatctaag 591
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctctccaataagatcatacctatctatcccatttattctaatctaag 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_g16.g1 MSMg01no351_g16.g1 CHROMAT_FILE:
MSMg01no351_g16.g1 PHD_FILE: MSMg01no351_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:39 2005
(569 letters)
>mm_chr1_107429200_107430167
Length = 968
Score = 1046 bits (541), Expect = 0.0
Identities = 562/569 (98%), Gaps = 1/569 (0%)
Strand = Plus / Minus
Query: 1 actgacagttgtgtcagtggaaatcagggctgtatgaatggggtcttaggctgttttgcc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 768 actgacagttgtgtcagtggaaatcagggctgtatgaatgggttcttaggctgttttgcc 709
Query: 61 tttgtgacaagttttcttactaagcttctctatgttagaatataactgatatcctcaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttgtgacaagttttcttactaagcttctctatgttagaatataactgatatcctcaaac 649
Query: 121 attttgtgtctgttattcatatgggtatccaggctgttgtatggctttatgaatgccagg 180
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 648 attttg-gtctgttattcatatgggtatccgggctgttgtatggctttatgaatgccagg 590
Query: 181 attttagacaatatagcaattcactagccttgggatcttagttaacttatctgtgatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 attttagacaatatagcaattcactagccttgggatcttagttaacttatctgtgatatc 530
Query: 241 atacagtgttacctagaatgacagagtggatctacagaatgtttttaaaaaattttctca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 529 atacagtgttacctagaatgacagagtggatctacagaatgttttttaaaaattttctca 470
Query: 301 gctgtaaattgcaagttagtaaaaagtaattatggatgcgaaatcccccagccagatgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gctgtaaattgcaagttagtaaaaagtaattatggatgcgaaatcccccagccagatgcc 410
Query: 361 tgaaggagcagtggtatttcagtaatgagcttcatcaatgcttcctaccaacaatgtcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgaaggagcagtggtatttcagtaatgagcttcatcaatgcttcctaccaacaatgtcag 350
Query: 421 cttgaacaggctacaagacaggcatttcaggccatagtgagaagacaactgatctgtgga 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 349 cttgaacaggctacaagacaggcatttcaggacatagtgagaagacaactgatctgtgga 290
Query: 481 atgaattgcttttatagataggcttttcattatactagaagatggaccacttatgtttac 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 289 atgaattgcttttatagataggcttttcattagactagaagatggaccacttatgtttac 230
Query: 541 agacgcttttgcttaaagatccagtttga 569
||||||||||||||| |||||||||||||
Sbjct: 229 agacgcttttgcttagagatccagtttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
