NNNNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTGATCTTTCCCCAACTTTTATCATGAATGGTT
GTTGGATTTTGTCAAATGCTTTCTCTGCATCTAAGGAGATGATCATGTGT
TTTTTTCTTTGAGTTTGTTTATATAATGGATTAAGTTGATGGATTTCCAT
ATATTAAACCATCCCTGCATCCCTGGAGTAAAACCTACTTGGTCAGGATG
GATGATTTTTTTAATGTATTCTTGGATTCTTTCTGTGGTTTAGGCATCAG
AGTAATTGTGGCTTCATAGAATGAGTTGGATAGAGTTCCCTCTACTTCTA
TTTTGTGGAATAGTTGGTGCAGAGCTGGAATTAGATCTTCGTTGAAGGTC
TGGTAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTGGCTG
GGAGACTATTAATGATTGTTTCTATTTCTTTAGGGGACATGGGACTGTTT
AGATCATTAACTTGATCATGATTTAACTTTGGTACCTGATATCTGTCTAG
AAATTTGTCCATTTCGTCCAGGTTTTTCCAGTTTGTTGACAATAACCCTC
TCAGTAGTCCCAAATAATATTAAATATCTTGGGTTGAATCCTACTAAGAA
AGTGAAAAACTGTTTGATTCAAATTTCTATTTTCTTGAAAAAAAATTTAT
AAAAATTTTCCTAAAATGGAATAATCCCCCCTGCCCCCTGGTG

NNNNNNNNNNCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGGTAATAACT
TAGAGAAATAGGAAAATAGAGGGTCTAGACCTCATATCCTGAAAGCAGGA
TCACAAAGGGAAATAGGATGAGCTTTAGGAAATCCTGAGGGGGACTGCAG
GCTATTAGCAAAACTTTATCATAGTCAAGTCACTATCAGGCAAGAGTAGG
CACTTGCAAGTCTTCCTGCCTCTGCCTTAGTGTTGTGGGAAGGCTGAGGG
CAGGAAGTTTGGGAGTTCTGAGGCTAGAAAACCAAGAAGTAAAGAGCAAG
ATCATGTGTGTCTACCAGAACATATGTGGTAGCTAGGCAATACAGGAGGA
TAATAGGTGAAGGTGATGCCTTTATGAGTAATGCAGGTGAGGATAGTCCA
GTAGGAACAAAGACAACCATTATGCTTCCTCCTGTTTTAGATGGGGGGTT
TTGGGAGAGCACCCACAAGGCTCCCTTCTATTATAGATGAAGTGTTATTG
AAGGTACCAAGTAAGGTTCCTTCTGTACCACCTGGGGTGTTATGGGAGGG
GATCTGGAAGGGGTCTTTCTGCCGTAACTTGAGGGGGTAAGGAGAGTACC
CGCAACCTTTTTTTTCCTTTGGACCGGGGGAGTTAGGGGTAACACACCTG
GAGCCCACAAAAAACTGGAAGGAGCTTGGTTACACCCCCACGTGCCAAAA
AAAAAAAATAAAGGTAGGG

Query= MSMg01no351_i23.g1 MSMg01no351_i23.g1 CHROMAT_FILE:
MSMg01no351_i23.g1 PHD_FILE: MSMg01no351_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:50 2005
         (400 letters)



>mm_chr1_27404192_27404991
          Length = 800

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%), Gaps = 2/401 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaggtaataacttagagaaataggaaaatagagggtctagacctcatatcctgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaggtaataacttagagaaataggaaaatagagggtctagacctcatatcctgaaag 260

                                                                       
Query: 61  caggatcacaaagggaaataggatgagctttaggaaatcctgagggggactgcaggctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatcacaaagggaaataggatgagctttaggaaatcctgagggggactgcaggctat 320

                                                                       
Query: 121 tagcaaaactttatcatagtcaagtcactatcaggcaagagtaggcacttgcaagtcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaaaactttatcatagtcaagtcactatcaggcaagagtaggcacttgcaagtcttc 380

                                                                       
Query: 181 ctgcctct-gccttagtgttgtgggaaggctgagggcaggaagtttgggagttctgaggc 239
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcc-cttgccttagtgttgtgggaaggctgagggcaggaagtttgggagttctgaggc 439

                                                                       
Query: 240 tagaaaaccaagaagtaaagagcaagatcatgtgtgtctaccagaacatatgtggtagct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagaaaaccaagaagtaaagagcaagatcatgtgtgtctaccagaacatatgtggtagct 499

                                                                       
Query: 300 aggcaatacaggaggataataggtgaaggtgatgcctttatgagtaatgcaggtgaggat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggcaatacaggaggataataggtgaaggtgatgcctttatgagtaatgcaggtgaggat 559

                                                    
Query: 360 agtccagtaggaacaaagacaaccattatgcttcctcctgt 400
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtccagtaggaacaaagacaaccattatgcttcctcctgt 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)