BAC Information

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BAC

Clone NameMSMg01-351J05
Chromosome1 (Build37)
Map Location 50,087,664 - 50,215,764
singlet/doubletdoublet
Overlap geneEG666962
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351J05.T7 (MSMg01no351_j05.b1)MSMg01-351J05.TJ (MSMg01no351_j05.g1)
ACCAG462913AG462914
length770745
length of high quality
(start - end)		272 (53 - 324)429 (83 - 511)
definitionCHROMAT_FILE: MSMg01no351_j05.b1 PHD_FILE: MSMg01no351_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:51 2005CHROMAT_FILE: MSMg01no351_j05.g1 PHD_FILE: MSMg01no351_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,215,501 - 50,215,764)(50,087,664 - 50,088,090)
sequence
NNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAAATAGTTTATCCCATTTCTCTTAGACTTAACTTTT
CAAAGTAAAAAAAATATCAAAACAAAATCAAAACAGACTACTTAAACTTC
ATCTCTGGTTAAAGACAAAGTAAACCCTATAGCTATAAGCTTCTTAAATA
TGACCTATGAACACAAAAACTCCATCGTGAGAGTGCTTTCAAATATTTTC
ATAGTATATACATATAGATAGATAGAGATAGATGATATAGATATAGATAG
ATATAGGTGTAGATGTTGATGTANCTATANATATATATATTTAAACTAAN
NCAAAAATCATAATTATTTTGAAATTATAAAGGNAAATGTTTCCAGAATT
TTTCATGGANTCTAATGCTGAAGCAGGAATGCTTAAAATAAAAATATTAT
AATGGAGGCAGAAAAGACTGGTGTATATATCATTATGCTGCTCTTTCAGA
GGACATGTGATCAAATTCCCAGCATACACATATTGGTCTAACCAACATTT
CCTGACATATATTTAAGTTCATCTTAGATGGACATCCCGATTGTGTCGGT
TAGTGGGTTACAATTCTTTTTGACTGACTTGGGTGCGAACACAATCAACA
TATCGTTCCATTATAAGCAGCTGTTTATTGCGGGAAAATAAATCAAAAAC
TAAGTATCCGCACATGCTTACCCACTTTATATATTCCCCTGATATATTCC
CACTCCTTACCTCTAAACCT

NNNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCAATGCTTTGAGAT
AGAAACTCAGGTCAATGCTTTGAGATAATTTAATGAGTTAGTGAAAACTA
ATATATTCAAAAAAGAATGAGACACACAGAAATGTGCTCTATTGAAGGAT
ATAAAATGTGAATTTAGAAGACAATTTATAATATCATGAATAAGTATATT
GAAACTATAATATACTCTTCATACTGATAGCCTTGACTTAATAAAAATAT
CTTATTTGTTTTAGGTGTTTATTAGCCCCTCAAAACAGTATTCTTTAATA
CATTTGTGTTTGTTACAGCCTTTGCTGATGCGGTCCAAGTAAATAAATTC
TTTGGAGAAATTACTAAATCAAGATCTCAACAGCAAGCTAAAAAGTAGAA
AGTACCAGAAGGACAGGAGACAAATGTAAATACATATGAGCCAATGGCAT
GATTAATCTNAGACTTTCTGGNNNGGGNAAAAAAAAAAACCCCCNNTTAA
AACCCCCTCGGTGGTGGGGGGTTCTCTCCCCCAAAAATATTTTTTTTTTC
AAATTTTTCCCTTTTTTTTTTGTTGTGAATACAGAAAATAACTCTCATCC
CCATTCCCCCAAAATCACAAAAAATATACNCCCTTTTTTTTCTCCAATTT
TAACCTTAAAACTATTCTTAACTTTCTTCTTTTCTTTTCATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_j05.b1 MSMg01no351_j05.b1 CHROMAT_FILE:
MSMg01no351_j05.b1 PHD_FILE: MSMg01no351_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:51 2005
         (272 letters)



>mm_chr1_50215367_50216038
          Length = 672

 Score =  495 bits (256), Expect = e-144
 Identities = 262/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaatagtttatcccatttctcttagacttaacttttcaaagtaaaaaaaata 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 gaattcaaaaatagtttatcccatttctcttagacttaacttttcaaagtaaaaaacata 339

                                                                       
Query: 65  tcaaaacaaaatcaaaacagactacttaaacttcatctctggttaaagacaaagtaaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 338 tcaaaacaaaatcaaaacagactacttaaacttcatctctggttaaagacaaattaaacc 279

                                                                       
Query: 125 ctatagctataagcttcttaaatatgacctatgaacacaaaaactccatcgtgagagtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctatagctataagcttcttaaatatgacctatgaacacaaaaactccatcgtgagagtgc 219

                                                                       
Query: 185 tttcaaatattttcatagtatatacatatagatagatagagatagatgatatagatatag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttcaaatattttcatagtatatacatatagatagatagagatagatgatatagatatag 159

                                   
Query: 245 atagatataggtgtagatgttgat 268
           ||||||||||||||||||||||||
Sbjct: 158 atagatataggtgtagatgttgat 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no351_j05.g1 MSMg01no351_j05.g1 CHROMAT_FILE:
MSMg01no351_j05.g1 PHD_FILE: MSMg01no351_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:51 2005
         (429 letters)



>mm_chr1_50087464_50088292
          Length = 829

 Score =  810 bits (419), Expect = 0.0
 Identities = 425/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcaatgctttgagatagaaactcaggtcaatgctttgagataatttaatgagttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcaatgctttgagatagaaactcaggtcaatgctttgagataatttaatgagttagt 260

                                                                       
Query: 61  gaaaactaatatattcaaaaaagaatgagacacacagaaatgtgctctattgaaggatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaactaatatattcaaaaaagaatgagacacacagaaatgtgctctattgaaggatat 320

                                                                       
Query: 121 aaaatgtgaatttagaagacaatttataatatcatgaataagtatattgaaactataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatgtgaatttagaagacaatttataatatcatgaataagtatattgaaactataata 380

                                                                       
Query: 181 tactcttcatactgatagccttgacttaataaaaatatcttatttgttttaggtgtttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcttcatactgatagccttgacttaataaaaatatcttatttgttttaggtgtttat 440

                                                                       
Query: 241 tagcccctcaaaacagtattctttaatacatttgtgtttgttacagcctttgctgatgcg 300
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tagcccctcgaaacagtattctttaatacacttgtgtttgttacagcctttgctgatgcg 500

                                                                       
Query: 301 gtccaagtaaataaattctttggagaaattactaaatcaagatctcaacagcaagctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccaagtaaataaattctttggagaaattactaaatcaagatctcaacagcaagctaaa 560

                                                                       
Query: 361 aagtagaaagtaccagaaggacaggagacaaatgtaaatacatatgagccaatggcatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtagaaagtaccagaaggacaggagacaaatgtaaatacatatgagccaatggcatga 620

                  
Query: 421 ttaatct 427
           |||||||
Sbjct: 621 ttaatct 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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