BAC Information

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BAC

Clone NameMSMg01-351J11
Chromosome1 (Build37)
Map Location 195,975,566 - 195,975,740
singlet/doubletsinglet
Overlap genenone
Upstream geneIrf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351J11.T7 (MSMg01no351_j11.b1)MSMg01-351J11.TJ (MSMg01no351_j11.g1)
ACCAG462925AG462926
length7761,194
length of high quality
(start - end)
181 (54 - 234)---
definitionCHROMAT_FILE: MSMg01no351_j11.b1 PHD_FILE: MSMg01no351_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:52 2005CHROMAT_FILE: MSMg01no351_j11.g1 PHD_FILE: MSMg01no351_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAAGCTGTTCACCAAAGCTGACACACACTTAACAGG
CCTTTGAAATGTAAAAGATCTTAGCAGCTTTAATAACTCTATGCATGTTA
TCTGTTCTTGTTTTTTTTTTTCCTTCAAAGCTCAACAAAGCACTCTTTTA
AAAAATTGCAATTCATATATACCCTCTCACTTGTATATTATATGATGNAA
NAAGGAAGGNATTAGAAGGAAAAAAAAAAAAANGGAAAAAAGAAAAAAAA
AAAAAAAAANTNNAAANNAANNAAATTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTATATTATTTATGAGTGTAACTAAATATTGGGTTGGG
GGGGCGCGGNNNNNANNNNNNNNNNNAATAATCGGGGGGGGGGGCTGGGG
NNCCTTCTTCTTCTATACCCNNNNNNNNNNNNNNNNNNCTNNNNTTGNNN
NNNNNNNNNNNNNNNNNNNNNAGACAGAGAGAAGGAAGGAGGGCGGGGGG
GGGGGGGGGGGGGCTGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGAGNC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNTNNNNNNNNNN
NNNNNNNNNNNTNNNNNTNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTNNNNNNTTNNNNNTNNTNNNNTNNNNNTTNNNNNTTTNNNNTN
NNNNTTTTTTTTTTTTATTATTTGTG
TTTGTTAGGGCCTTTTTTGGGGTNGAATCGTGTAGGCCGGCGCTGGGCCG
CTCTCACATTTTAGGATGACACTAACATATAGGAATTTGCTGGGAAAGAC
ACGCCTCGAAACCAATAAAACCCTTGCACTAGTTGATGTGATTGTATCAA
AGCTGATGTATTGATGCTATGCGGAAGTAGTTCGCTACTCTCTCTAGCTT
AACCGCCCACGTGGCAGCCGATCAATCAACGAAGAGGGCTATGAGCCGTG
TAACGGAAGATCTGGAAGGCGGATAAGACAGCTACCATTAATATACCATT
TATCTTCGAGCTTCGATCATATGCATGAAATTATGTTTCGATGCGCTAAG
CGACTTTAGTTATTGCACCCACCATGTAAAGAACGGTACACACGACGCTA
TGTTGCATCGATTCCTCGCGCAGTCTTTTTACGCCGTGATATGTGCGGTC
TGTGTAAGACTGGTTTATAATAGTCCGACTCATATACAGTACATGTCAGT
CCTCCTCAGCTGACTGCCCCCGAGATCATCAGAGCTTTTCTAACCATACC
CTCTTCATCACCACCCATTCGCGATCCGGCTGGTTATGATATTCTCTAAG
CATACGTATCTGACCAGTGCATTGTCGGTTAAATTGGACAAAACGCGAGG
TGGGTCTCTACCATGCGTGCGGCTATACCGTCTCAGCCTTGTCCACCCCC
CTTAACATTACGGTCAGCGTTGCTCTTTTACCTGCTCCCCTCGTTCCACC
CCTTGTTCTTATCCCTCAGTATTCGTCCGCCTCTCTCGACCGTGCGCCCT
CGAACGCTCTCTCATAGCGCCACTTATCCCCGGCTCTACTAATTACGCGG
GCTGAAGACGTGACCTCGCTCGTACTCAGTAGTGATTTGTCGTTCCTATA
AATAGTTCGACCAATACGCCTACTCATAAACGACGACAGATAGACACGGT
AGAACCTACTAAACGTCAAGCGCCGCGTACTACCCTATACACGGAATACG
TCATATACGTCCGGCACATGCCTCTCACGTAATGATAGTCTTAGTCGTAT
ACCACAAGTGTATGACTCCTGTTCGTTAATATTTATACAGCTACGCGAAT
CCACCTATATACGCACGCATCGCGCAATCCGACATATCCGCATTCCTTCG
TATACTACATCTCTCACNTTATCTTGATATCTGCAAGCAGTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_j11.b1 MSMg01no351_j11.b1 CHROMAT_FILE:
MSMg01no351_j11.b1 PHD_FILE: MSMg01no351_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:52 2005
         (181 letters)



>mm_chr1_195975362_195975940
          Length = 579

 Score =  315 bits (163), Expect = 8e-91
 Identities = 173/177 (97%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaagctgttcaccaaagctgacacacacttaacaggcctttgaaatgtaaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaagctgttcaccaaagctgacacacacttaacaggcctttgaaatgtaaaag 264

                                                                       
Query: 65  atcttagcagctttaataactctatgcatgttatctgttcttgtttttttttttccttca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 265 atcttagcagctttaataactctatgcatgttatctgttcttgttttttttc--ccttca 322

                                                                    
Query: 125 aagctcaacaaagcactcttttaaaaaattgcaattcatatataccctctcacttgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 323 aagctcaacaaagcactcttttaaaaaattgcaattcatatataccctctcccttgt 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 579
Length adjustment: 8
Effective length of query: 173
Effective length of database: 571
Effective search space:    98783
Effective search space used:    98783
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)