Query= MSMg01no351_l16.b1 MSMg01no351_l16.b1 CHROMAT_FILE:
MSMg01no351_l16.b1 PHD_FILE: MSMg01no351_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:03 2005
(608 letters)
>mm_chr1_17352066_17353072
Length = 1007
Score = 774 bits (400), Expect = 0.0
Identities = 450/468 (96%), Gaps = 8/468 (1%)
Strand = Plus / Minus
Query: 5 gaattctaccagaatttcagagaagtgaaaagacattctgaaagacttttttttttttac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaattctaccagaatttcagagaagtgaaaagacattctgaaagacttttttttttttac 404
Query: 65 tttttatggatttttttactaaaagaattcttcaaaaacattggcatattgactatttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttttatggatttttttactaaaagaattcttcaaaaacattggcatattgactatttga 344
Query: 125 gcttgattctagacattgtcataattaaatcaaaatcaggaatatattctaacatttttc 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 343 gcttgattctagacattgtcataattaaatcaaaatcagggatatattctaacatttttc 284
Query: 185 aaatat-cattttaagcagggaactcagaaatcacctatgctcctcaaattaataatttt 243
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaat-tccattttaagcagggaactcagaaatcacctatgctcctcaaattaataatttt 225
Query: 244 gaggagtatacacgcaacacaaaacaagagaaacat--caccaaattcatttttatgaga 301
||||| ||||||| ||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 224 gagga-tatacacacaacacaaaacaaaagaaacattgca--aaattcatttttatgaga 168
Query: 302 ccacagttactctgatatccagactacataaagattcaaaaaagaaatgattaaagacta 361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ccacagttactctgatacccagactacataaagattcaaaaaagaaatgattaaagacta 108
Query: 362 atttcccttatgaatatatatgcaaaaaaatcttaatagaatactggcaaaccaaatcca 421
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 107 atttcccttatgaatatatatac-aaaaaatcttaatagaatactggcaaaccaaatcca 49
Query: 422 aaaatacatcaaaatatcgtccaccatgattaagactccatttcaaaa 469
| ||||||||||||||| || ||||| ||||||||||||||| |||||
Sbjct: 48 agaatacatcaaaatattgttcaccacgattaagactccattccaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_l16.g1 MSMg01no351_l16.g1 CHROMAT_FILE:
MSMg01no351_l16.g1 PHD_FILE: MSMg01no351_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:03 2005
(472 letters)
>mm_chr1_17145735_17146606
Length = 872
Score = 882 bits (456), Expect = 0.0
Identities = 468/472 (99%)
Strand = Plus / Plus
Query: 1 ttccttgcactagtggaaatgagctagttggcattttccagaacattttaagaggcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccttgcactagtggaaatgagctagttggcattttccagaacattttaagaggcagat 260
Query: 61 tgggaaatgattctgaagggacataaccttgccttttgggtttcattcttcacttttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaaatgattctgaagggacataaccttgccttttgggtttcattcttcacttttttc 320
Query: 121 tttgtgggtactctttgaaatataagttcttagaagatatgatggtgtaataagtagagt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tttgtgggtactctttgaaatataagttcttagaagatatggtggtgtaataagtagagt 380
Query: 181 agagtattagtagtggtaaggttacatttgttttgttttacatagaggagctgtgagatc 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agagtattagtagtggtaaggttacatttgttttgttttaaatagaggagctgtgagatc 440
Query: 241 atgggttaactttccagtatccatgttctagtctctgtgttaagtactacagggctttca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggttaactttccagtatccatgttctagtctctgtgttaagtactacagggctttca 500
Query: 301 agggtaagtattctagagtaattctcaacttggggatgtgttcacttactataatttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggtaagtattctagagtaattctcaacttggggatgtgttcacttactataatttatc 560
Query: 361 atgtcctgagtatgtgttgaatagtgattaaacttgaggggtctaatggagcatgttatg 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcctgagtatgtgttgaataatgattaaacttgaggggtctaatggagcatgttatg 620
Query: 421 tgctcccaaatcacaaaggttttacaatctagattttcaccagcaagtgaag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctcccaaatcacaaaggttttacaatctagattttcaccagcaagtgaag 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
