Query= MSMg01no351_l23.b1 MSMg01no351_l23.b1 CHROMAT_FILE:
MSMg01no351_l23.b1 PHD_FILE: MSMg01no351_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:04 2005
(481 letters)
>mm_chr1_39723491_39724371
Length = 881
Score = 922 bits (477), Expect = 0.0
Identities = 477/477 (100%)
Strand = Plus / Minus
Query: 5 gaattccataggtttaaataagccaatcactgagaaatgctttaaaacaacatccagtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattccataggtttaaataagccaatcactgagaaatgctttaaaacaacatccagtca 622
Query: 65 tccactagtcatcatggtgattccccctggcaagctccttgctctgagcacctgccctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccactagtcatcatggtgattccccctggcaagctccttgctctgagcacctgccctta 562
Query: 125 acgccacccaactccatagtcccggaagctcattacagtgaagtctgacttatgtttaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acgccacccaactccatagtcccggaagctcattacagtgaagtctgacttatgtttaat 502
Query: 185 tggcggaaacaatagagaagacattaaaaacttaattgaacttcgtaataaagcagtaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcggaaacaatagagaagacattaaaaacttaattgaacttcgtaataaagcagtaca 442
Query: 245 agcagatgaatgacagataatccaaggtaatatgcattagagattaattaaagctgctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagatgaatgacagataatccaaggtaatatgcattagagattaattaaagctgctct 382
Query: 305 gtttcttcacgcctgctgacttagctgtaatgacttaaacaagcgaacactgagaagtca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcttcacgcctgctgacttagctgtaatgacttaaacaagcgaacactgagaagtca 322
Query: 365 cacgcctctgatttccatagcattcattatccagcatgtgtgcgcatcatcaatgaaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgcctctgatttccatagcattcattatccagcatgtgtgcgcatcatcaatgaaaaa 262
Query: 425 aggcacacacacaaacacacgcacacgcctgtgtcccatctgcactcatctgctgag 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcacacacacaaacacacgcacacgcctgtgtcccatctgcactcatctgctgag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_l23.g1 MSMg01no351_l23.g1 CHROMAT_FILE:
MSMg01no351_l23.g1 PHD_FILE: MSMg01no351_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:04 2005
(382 letters)
>mm_chr1_39596134_39596916
Length = 783
Score = 733 bits (379), Expect = 0.0
Identities = 382/383 (99%), Gaps = 1/383 (0%)
Strand = Plus / Plus
Query: 1 caggacacctgaggacataaaggagattttaagaaaacaaccatcatcattatcttgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacacctgaggacataaaggagattttaagaaaacaaccatcatcattatcttgtcg 260
Query: 61 tcatcatcatctgcatctgcatatttgacacctgcatcctcagcctaagtggctatgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcatcatctgcatctgcatatttgacacctgcatcctcagcctaagtggctatgctt 320
Query: 121 gcattaaaactcagttcatgttcatgttttcctctttctgaaaaacagacttgtattggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattaaaactcagttcatgttcatgttttcctctttctgaaaaacagacttgtattggc 380
Query: 181 atcatgctgatggtgtgtgtgttgggggggg-tcacgtgttctcggttgtcatttgagcg 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 atcatgctgatggtgtgtgtgttgggggggggtcacgtgttctcggttgtcatttgagcg 440
Query: 240 tggaactctgatttttatagcattactgtttgaagtatgtcttatcacatgtccttgtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaactctgatttttatagcattactgtttgaagtatgtcttatcacatgtccttgtta 500
Query: 300 aaggtacccttgtacttcattaaatgcatatagggtgtgtgcaaatgttagctcaccgac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtacccttgtacttcattaaatgcatatagggtgtgtgcaaatgttagctcaccgac 560
Query: 360 agtcatgtgttactctcattata 382
|||||||||||||||||||||||
Sbjct: 561 agtcatgtgttactctcattata 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 783
Length adjustment: 9
Effective length of query: 373
Effective length of database: 774
Effective search space: 288702
Effective search space used: 288702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
