BAC Information

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BAC

Clone NameMSMg01-351N10
Chromosome1 (Build37)
Map Location 158,634,031 - 158,819,474
singlet/doubletdoublet
Overlap geneC530043G21Rik, LOC433368, Ralgps2, Angptl1
Upstream geneQscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a
Downstream gene4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351N10.T7 (MSMg01no351_n10.b1)MSMg01-351N10.TJ (MSMg01no351_n10.g1)
ACCAG463113AG463114
length748761
length of high quality
(start - end)		528 (52 - 579)496 (83 - 578)
definitionCHROMAT_FILE: MSMg01no351_n10.b1 PHD_FILE: MSMg01no351_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:11 2005CHROMAT_FILE: MSMg01no351_n10.g1 PHD_FILE: MSMg01no351_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,819,037 - 158,819,474)(158,634,031 - 158,634,526)
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTCTACTAGCATACATGCATCAGAACATTTTGAATGG
TGGTGTAAACTAGACATATGTATGTGTTTCATTTACATTCAGTATGATAT
GGAAATAATAATCATAATTTTGAAGCAGCAAGGCAAAAGTGACATTTTTG
AGCTCTCTGTACCAGTTGTGTTTACTTCTTTTATATTAAAAAGAGTACGT
ATATTCTGCAGCCTACATTTATAATTAAAAACGATTCAGTTATTTTTATT
TTATGTGGATGGGTGTATTGCCTGAAACCACGTCTGTGTAACACTTGAGT
GTGTGGCGCCCACAGAGGCCAGAAGAGGGCATATGATCCCCTGGAATTGG
ATTTACAGACAGCTGTGAGCCACCATGTAGCTGTTAGTTAGTTAAACCCT
GATCTTCCATAAGATCCAGCAAGTGTTCTTAACTGCTAAGCCATCTCTCC
AGCCCACAGTGGTTCATTTCAAGTAAAGGGGATTAGTATATATATATATT
TTTTTAAGTTTCTTTTTCTTTTAATACAAGATCTTGAGGCACTTGAATTC
TATTCTTAGACCACTGGAGTGATCAAGAACTTCTTTACTAAACAGGTGTC
TGCCAATATCCGAAGTCAACAACTGTCAGATCAAAGAATGAAATGGTTTC
CAACAATTAATTTGGGGACCCGAAAATTGGCTCCCCTGGAACCGGAAT

GGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTGTACGTGATTGT
GTGTACATATATGTGTGAATTTGCATGGGGTGTGTGTGTGTGCATATGTG
TGTACATGCATGTGAAGGCTAAAGGATAGCTTCAGTGTCATTCTTTAAGC
ACTATCTAACTCTTTAAAAAGTGTTCTTCATCGACATGGTTCCATAACTT
ACTGGTTGGCCAGTGGGACCCAAGAATCCACTGGCTCTGTCTCCCCAGTA
CTGAGATCACAAGCACACATCACCATGCCTGGTCTTGCTCACACATGTAT
GTATATAGATGTATTTGCCTGAGTGTGTGTATGGAAGCCAGAAGCTGGTA
TCTTTCCTTTATTGCGCTCTACCTTATTATTTCTGAGACATGTCTCTTTC
CAAACCTGAAGCTTGCTGCTTCAGCTAGTGTGGTGGTTTGACTAAGAATG
GCCTCCACTGGCTCATGTACCTAAGTGCTCAGTCTTCAGGGAGGAATACT
ATTTGAAAGGATGATAAGGAGTAAGAGGTGTGGCCTTGTTGGAGTGCCAC
AGAAGCGTACGCTTTGAGGTTTCAAAAAGCCATGACAGTACTGGGTTCTC
TGCCCCCTGTTTGTATATCCACAAAGTACCCATGGTAACTTCCTCTAACC
TCCATGCCCTGCTTGGCCTGTACTCCTGGCTCGTGATGCACATACGCAAT
TAATCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_n10.b1 MSMg01no351_n10.b1 CHROMAT_FILE:
MSMg01no351_n10.b1 PHD_FILE: MSMg01no351_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:11 2005
         (528 letters)



>mm_chr1_158819037_158819964
          Length = 928

 Score =  808 bits (418), Expect = 0.0
 Identities = 433/438 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttctactagcatacatgcatcagaacattttgaatggtggtgtaaactagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattcagttctactagcatacatgcatcagaacattttgaatggtggtgtaaactagac 379

                                                                       
Query: 65  atatgtatgtgtttcatttacattcagtatgatatggaaataataatcataattttgaag 124
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 378 atatgtatgtgtttcatttacattcagtatgatatggagataataatcataaatttgaag 319

                                                                       
Query: 125 cagcaaggcaaaagtgacatttttgagctctctgtaccagttgtgtttacttcttttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 318 cagcaaggcaaaagtgacatttttgagctctctgtaccagttgtgtttatttcttttata 259

                                                                       
Query: 185 ttaaaaagagtacgtatattctgcagcctacatttataattaaaaacgattcagttattt 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttacaaagagtacgtatattctgcagcctacatttataattaaaaacgattcagttattt 199

                                                                       
Query: 245 ttattttatgtggatgggtgtattgcctgaaaccacgtctgtgtaacacttgagtgtgtg 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttattttatgtggatgggtgttttgcctgaaaccacgtctgtgtaacacttgagtgtgtg 139

                                                                       
Query: 305 gcgcccacagaggccagaagagggcatatgatcccctggaattggatttacagacagctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcgcccacagaggccagaagagggcatatgatcccctggaattggatttacagacagctg 79

                                                                       
Query: 365 tgagccaccatgtagctgttagttagttaaaccctgatcttccataagatccagcaagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tgagccaccatgtagctgttagttagttaaaccctgatcttccataagatccagcaagtg 19

                             
Query: 425 ttcttaactgctaagcca 442
           ||||||||||||||||||
Sbjct: 18  ttcttaactgctaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_n10.g1 MSMg01no351_n10.g1 CHROMAT_FILE:
MSMg01no351_n10.g1 PHD_FILE: MSMg01no351_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:11 2005
         (496 letters)



>mm_chr1_158633831_158634726
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 492/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgttgtacgtgattgtgtgtacatatatgtgtgaatttgcatggggtgtgtgtgtgtg 60
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgtgttgtacatgattgtgtgtacatatatgtgtgaatttgcatgggatgtgtgtgtgtg 260

                                                                       
Query: 61  catatgtgtgtacatgcatgtgaaggctaaaggatagcttcagtgtcattctttaagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatgtgtgtacatgcatgtgaaggctaaaggatagcttcagtgtcattctttaagcac 320

                                                                       
Query: 121 tatctaactctttaaaaagtgttcttcatcgacatggttccataacttactggttggcca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctaattctttaaaaagtgttcttcatcgacatggttccataacttactggttggcca 380

                                                                       
Query: 181 gtgggacccaagaatccactggctctgtctccccagtactgagatcacaagcacacatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggacccaagaatccactggctctgtctccccagtactgagatcacaagcacacatca 440

                                                                       
Query: 241 ccatgcctggtcttgctcacacatgtatgtatatagatgtatttgcctgagtgtgtgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgcctggtcttgctcacacatgtatgtatatagatgtatttgcctgagtgtgtgtat 500

                                                                       
Query: 301 ggaagccagaagctggtatctttcctttattgcgctctaccttattatttctgagacatg 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ggaagccagaagctggtatctttcctttattgctctctaccttattatttctgagacatg 560

                                                                       
Query: 361 tctctttccaaacctgaagcttgctgcttcagctagtgtggtggtttgactaagaatggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctttccaaacctgaagcttgctgcttcagctagtgtggtggtttgactaagaatggc 620

                                                                       
Query: 421 ctccactggctcatgtacctaagtgctcagtcttcagggaggaatactatttgaaaggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccactggctcatgtacctaagtgctcagtcttcagggaggaatactatttgaaaggat 680

                           
Query: 481 gataaggagtaagagg 496
           ||||||||||||||||
Sbjct: 681 gataaggagtaagagg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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