BAC Information

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BAC

Clone NameMSMg01-351N14
Chromosome1 (Build37)
Map Location 171,303,372 - 171,303,961
singlet/doubletsinglet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351N14.T7 (MSMg01no351_n14.b1)MSMg01-351N14.TJ (MSMg01no351_n14.g1)
ACCAG463120AG463121
length1,493731
length of high quality
(start - end)
---590 (91 - 680)
definitionCHROMAT_FILE: MSMg01no351_n14.b1 PHD_FILE: MSMg01no351_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:12 2005CHROMAT_FILE: MSMg01no351_n14.g1 PHD_FILE: MSMg01no351_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTGCGCTGTGTATCTACTCATATTATGACGTGATATTATCTTTGTTTT
CTCCTCTCCCTCTCTCTCTCTCCCTCTCAGTCGCACTCCTCACTGTCCTC
CTCCTTCACAACACTACGACCACTCCCTTACCCTCTACCACGTCCAACCG
CTCCTCCTTCCCCCTGTAATCACCACGTCCACCACCCCGCGCCGTGCTAA
AGCTCACGCACATTTGACACACACGTGGGGGGGTGTTATTACTGGGTGTA
GGTCTAAAGAGTGAGGTGTGATGAAGATGTAGGCGTGACAGGTACATCCT
ATGAAGTATTGTACGCTCGCCTGATTCATAGTTGGACGTTTTAACATAAG
AGCATAGATGAGTGGGGTGGCGTGTGAGGTGAGGAGGTAAGCGAGCGGAG
TTAGAGTCTAGTCACTGACATTGCGATGTGNAGTGTTATATAACGAGTGT
GCACGCGCTGCTGCGTGTGGCGTTGAGCGAGCTCGCTGATATATGCTCAC
CTTTGCATATTCTTGCTGCGTCGCCTTATGTGTCACTTTCATCATTTACC
TTTGCTTTCCCATCTCCACTCCAATCTACACNAGTGCACACATCGCACTA
CATTGGCTCCTGTTCTTATTACTTGTTCTGAGACCCGNTTGCGCTCTCAC
GTCAGCGGTCGGGCGTCAGGCGACGCGACNCTCAAACTACTCACAACACA
AGTACTTCGGAAGTTAGACTGTCTGGTCTGCGCGCGTCGTGCTCTCCCAT
AACCTCCATATATGATTCATTTCGTATGTAACCTAGCTCACTCGATCTTA
TCGTGTNCCGCCGCCCATTGTTCTCCGTATATACTAACCACCTACTATCC
ACTCAGCCNCACTAATACGATTCCAGTATNTCATATTTACTCTCGCCGGC
GTNCTCGTGCTCACGACTATATGCCTATCTACTGATCCGTATGTATACCC
TATGTATANCGGCACATGTAGTCACTCTGCTGCTGACCTTATATACCACG
CCATATATAGATACCGATCATGTAGACAGTCGAGTATGGCGTGCACTGTC
GATAGAAGCATCGATGATGCGCCTCCATCGCGCGTAATATCCACGCCTAC
TCCGCTAGTACCTTAGTCATCGCCACCACAGTGGTTCTAGAGACGATATA
TGACAGATGCACTATGTCGAGCGTAACCACTCTCNCGAATATATATCGTN
TATATCCTGTCCCTCCGATCTGCACGCATGTATCCTGATAACCACCTCGC
CGCATGCCGTCGATGGTCTCGCGTTTANATGTGCGCTCTCAGCTACAGCT
CGTGATAGCGCACTCCCAACTACAATATGTAACGTAGATAGCGCACACTT
GTGCGCGATTCAGACTCGTCACACTAGCACGCACGACGCGCAGGTACTGC
GTTCGAGGTAGTCCACACTACATGCGATCATACTGTAATTGCGTATGAGT
GTAGTGTGCGCATGATGTGTCAGCGCATGGATGTATGATTTGN
NNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAATCCA
AACCTCCTGCAATGCAATCACCAAGCCCAGATGGCCATAACAACTCATCC
CAACCACTCCAAGAAGAAAAGATGCCAGTATAAATACGCCCCAGTACAGA
GAAACAAGTTTCTACTTCATTTTGTAAACATATAATCTGGACTTTAAAAA
ACCATCCAAGTCATTTTAAGAAAAGGAATTTATTGGTCCATCTTTCTCTA
GAATATCTTTCTCTTGAAGAATGCGATACATATACTAATATTAAATATTA
CTTTAAAGTAGCAACAACAGGTGACTCACACCTTAGACACTGGGAACCCA
ACAGTAGCTCCATTGTTGAACCTGGGAGCCTCTGGAGAAGTCCTACAGTG
GCTGTCTCATACTGGAAAAGCCAGTGACTTAGTAGTTGCTCAATCTACAA
GGTTGCGAACCTTGGCAGTCCCAATTTGACACCAGAACCACAAAAGTTCC
TGGAGATCTCTGGGTCCTTAGTCCACAATGGAAGCCTAGAGGCACTGATT
CTGATATCAGGGAAGGAATGGGCAGCAGCAGCAATAGGGAGCAATAAATC
AACGTGGAGGCTAGTGGGGAGACCAACGAGACAAGAAATGGTCCTCTGCC
ATGCCCTTTCATTGGACTGCTACCAGTAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_n14.g1 MSMg01no351_n14.g1 CHROMAT_FILE:
MSMg01no351_n14.g1 PHD_FILE: MSMg01no351_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:12 2005
         (590 letters)



>mm_chr1_171303172_171304161
          Length = 990

 Score = 1133 bits (586), Expect = 0.0
 Identities = 589/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaaatccaaacctcctgcaatgcaatcaccaagcccagatggccataacaactcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaaatccaaacctcctgcaatgcaatcaccaagcccagatggccataacaactcatcc 260

                                                                       
Query: 61  caaccactccaagaagaaaagatgccagtataaatacgccccagtacagagaaacaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccactccaagaagaaaagatgccagtataaatacgccccagtacagagaaacaagtt 320

                                                                       
Query: 121 tctacttcattttgtaaacatataatctggactttaaaaaaccatccaagtcattttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctacttcattttgtaaacatataatctggactttaaaaaaccatccaagtcattttaag 380

                                                                       
Query: 181 aaaaggaatttattggtccatctttctctagaatatctttctcttgaagaatgcgataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggaatttattggtccatctttctctagaatatctttctcttgaagaatgcgataca 440

                                                                       
Query: 241 tatactaatattaaatattactttaaagtagcaacaacaggtgactcacaccttagacac 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacaaatattaaatattactttaaagtagcaacaacaggtgactcacaccttagacac 500

                                                                       
Query: 301 tgggaacccaacagtagctccattgttgaacctgggagcctctggagaagtcctacagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaacccaacagtagctccattgttgaacctgggagcctctggagaagtcctacagtg 560

                                                                       
Query: 361 gctgtctcatactggaaaagccagtgacttagtagttgctcaatctacaaggttgcgaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtctcatactggaaaagccagtgacttagtagttgctcaatctacaaggttgcgaac 620

                                                                       
Query: 421 cttggcagtcccaatttgacaccagaaccacaaaagttcctggagatctctgggtcctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttggcagtcccaatttgacaccagaaccacaaaagttcctggagatctctgggtcctta 680

                                                                       
Query: 481 gtccacaatggaagcctagaggcactgattctgatatcagggaaggaatgggcagcagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtccacaatggaagcctagaggcactgattctgatatcagggaaggaatgggcagcagca 740

                                                             
Query: 541 gcaatagggagcaataaatcaacgtggaggctagtggggagaccaacgag 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaatagggagcaataaatcaacgtggaggctagtggggagaccaacgag 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)