BAC Information

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BAC

Clone NameMSMg01-351P05
Chromosome1 (Build37)
Map Location 69,948,715 - 70,106,199
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P05.T7 (MSMg01no351_p05.b1)MSMg01-351P05.TJ (MSMg01no351_p05.g1)
ACCAG463198AG463199
length741745
length of high quality
(start - end)		549 (50 - 598)531 (81 - 611)
definitionCHROMAT_FILE: MSMg01no351_p05.b1 PHD_FILE: MSMg01no351_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:19 2005CHROMAT_FILE: MSMg01no351_p05.g1 PHD_FILE: MSMg01no351_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,948,715 - 69,949,260)(70,105,816 - 70,106,199)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGAGATGACGTAAGTGTACTGGCTAGTTTTGTGTCAACT
TGACACAGGTGGAGTGATCACAGAAAAAGGAGCTTCAGTTGAGAAAATGC
CTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAAGAGG
AAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAATCTTGGTTCTA
TAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGGAACATC
CTTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCA
GTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCCAAATA
AACCCTTTCCTCCCCGACTTGCTTCTTGGTCATGATGTTTGTGCAGGAAT
AGAAACCCTGACTAAGACGGTAAGGAACTTTGAAAGTGTGTGGATTCATC
TAGCACCATAGACACATAATGAACTTGCAACAGTGGTTGCAATTACAGAC
AACACCTGATGAAGCTTAAAGTACTTCTATGCCATCTAATCAGGTCCACA
ATTTTTTTTCCTAAAGCCAAACTATCAAGTTAAGTAGGGACATGAAAGGC
CACAATATCCTATATTTTTAAACAATATCCTTTATTTTATGGAAAGAAGC
CCTTGATTCGACAGTTCCTGCAAACATGTAACTGAGATTTA

NNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAGAGATTTTTCAAAC
CTTCAAAATAGAGCAACCATATGACTAGCTATTTTACTCCTAGGCATATA
TCTAGACAAAGCAATGTCCTACCATCGAGATATTTATATTCCCATGTTTG
TTACTGCTTTATTCACTATCACAAAGAACTAGGATCAACCTTTTGTACAT
CAATAGATGAATAGATCATGAAATTTTGATGTATATATTAAATGGAATAC
TACATGGTTCTAAACAAAGTAAGTCAGAAACATATGCAGGAACATGGATA
GACTTAGAATATATAATTAAGCAAGGCCACACAAGCTCAGGAAGAAATCA
CATGACCTTTCTCATACATGGAATCTAGCCAATAATATTATGTGTGTATT
TTAAAAACATACCTGTGGTTACAGTAAACCATGGAGAAAAGAGAAACATA
AGGGGGTAATAAGATCTTAATGTAGATTATGGGCACAAGATGTGAACATG
GATATAAAACTAATTTCTTCCTGTGCTAATTCTGCGGCGCATTGCTTTGC
TTGTTTGTTTGTTTCTTTGGTTGCTTGGGTGGATGGTGCATAAGAGGTCA
TAAACAGACTTGATACTGAAAGTGTGGAATTGAATATGAAGCTTCACACA
TTCTGTCTTAATGGCAATTCTAATTGTAAAAAAATCATTAAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p05.b1 MSMg01no351_p05.b1 CHROMAT_FILE:
MSMg01no351_p05.b1 PHD_FILE: MSMg01no351_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:19 2005
         (549 letters)



>mm_chr1_69948512_69949460
          Length = 949

 Score = 1002 bits (518), Expect = 0.0
 Identities = 539/546 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatgagatgacgtaagtgtactggctagttttgtgtcaacttgacacaggtgg 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatgagaagaagtaagtgtactggctagttttgtgtcaacttgacacaggtgg 263

                                                                       
Query: 64  agtgatcacagaaaaaggagcttcagttgagaaaatgcctccatgagatccaactgtaag 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttatcacagaaaaaggagcttcagttgagaaaatgcctccatgagatccaactgtaag 323

                                                                       
Query: 124 gcattttctcaattagtgatcaaagaggaaaggccccttgtgggtgggaccatctctggg 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 gcattttctcaattagtgatcaaagagaaaaggccccttgtgggtgggaccatctctggg 383

                                                                       
Query: 184 ctggtaatcttggttctataagagagcaggctgagcaagccaggggaagcaagccagtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggtaatcttggttctataagagagcaggctgagcaagccaggggaagcaagccagtaa 443

                                                                       
Query: 244 ggaacatccttccatggcctctgcatcagctcctgcttcctgacctgcttgagttccagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaacatccttccatggcctctgcatcagctcctgcttcctgacctgcttgagttccagt 503

                                                                       
Query: 304 cctgacttccttggtgatgaacagcagtatggaagtgtaagccaaataaaccctttcctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctgacttccttggtgatgaacagcagtatggaagtgtaagccaaataaaccctttcctc 563

                                                                       
Query: 364 cccgacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagacggta 423
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 cccgacttgcttcttggtcatgatgtttgtgcaggaatagaaactctgactaagacggta 623

                                                                       
Query: 424 aggaactttgaaagtgtgtggattcatctagcaccatagacacataatgaacttgcaaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggaactttgaaagtgtgtggattcatctagcaccatagacacataatgaacttgcaaca 683

                                                                       
Query: 484 gtggttgcaattacagacaacacctgatgaagcttaaagtacttctatgccatctaatca 543
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 gtggttgcaattacagacaatacctgatgaagcttagagtacttctatgccatctaatca 743

                 
Query: 544 ggtcca 549
           ||||||
Sbjct: 744 ggtcca 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_p05.g1 MSMg01no351_p05.g1 CHROMAT_FILE:
MSMg01no351_p05.g1 PHD_FILE: MSMg01no351_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:19 2005
         (531 letters)



>mm_chr1_70105269_70106199
          Length = 931

 Score =  727 bits (376), Expect = 0.0
 Identities = 382/384 (99%)
 Strand = Plus / Minus

                                                                       
Query: 148 actaggatcaaccttttgtacatcaatagatgaatagatcatgaaattttgatgtatata 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 actaggatcaaccttttgtacatcaatagatgaatagatcatgaaattttgatgtatata 872

                                                                       
Query: 208 ttaaatggaatactacatggttctaaacaaagtaagtcagaaacatatgcaggaacatgg 267
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 871 ttaaatggaatactacatggttctaaacaaagtaagtcagaaacatttgcaggaacatgg 812

                                                                       
Query: 268 atagacttagaatatataattaagcaaggccacacaagctcaggaagaaatcacatgacc 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 atagacttagaatatataattaagcaaggccacacaagctcaggaagaaatcacatgacc 752

                                                                       
Query: 328 tttctcatacatggaatctagccaataatattatgtgtgtattttaaaaacatacctgtg 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tttctcatacatggaatctagccaataatattatgtgtgtattttaaaaacatacctgtg 692

                                                                       
Query: 388 gttacagtaaaccatggagaaaagagaaacataagggggtaataagatcttaatgtagat 447
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 691 gttacagtaaaccatggagaaaagagaaacataagggggtaataagaccttaatgtagat 632

                                                                       
Query: 448 tatgggcacaagatgtgaacatggatataaaactaatttcttcctgtgctaattctgcgg 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tatgggcacaagatgtgaacatggatataaaactaatttcttcctgtgctaattctgcgg 572

                                   
Query: 508 cgcattgctttgcttgtttgtttg 531
           ||||||||||||||||||||||||
Sbjct: 571 cgcattgctttgcttgtttgtttg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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