NCCACTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTGTTGTTCTATTTTCTTTCATATTAGTTTTTAATCGTA
CTCATTTGATGCTATTAGTGATGATAAAGCAAAAGATACAAGAAACAATA
TTTATTTGTATTAGAAAATGTCCTTTACAGAGCATTTTATTAACACATAT
TAACAACCTGACAAATTTTGCTCATCAGTATTTCTCGTGCTAGTGTAGTA
GTAATCTCACACAGTAGAGATTACTACGGAGCAAACAACCAGAACAGAAC
AAAGGTTAAACTTCACACCTTCTAGCCTTTAGACAACACAGTTAGCTCTT
TCACTGCCTTTACATTTGAATGAAATTTAATTTTTTCGTGTGTGTCTCAG
CTCTACTAACTTGATACTGCATCAGCTCTCTTTGGGTTTTGGCCCTAGTC
TTGGAGGGGACTAACTGGCATCTCTTTGGGCCTTTAGTTTTCCAATCATT
CTGCAGAATTTCAGACTCAATAGTCTGCCCAATCTTGTGAAACAGTCCTT
AAAATAAGTGTCACTATACATCTTTAAATGACACATATATAAACATAACT
CATATGTAAAAAGTGTAAACGTGTGAATACTTACAGAGAGAGAGTTTCAT
AGAAAAGTAGCTGGAGATTTACTAGAACTGCAATTGATTTTCAGATACCA
TTAGCAACCTGTTTCTTGAATTCTAACGCACCATGA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTT
TTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTAC
ATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAAC
CTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTA
GCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGG
TCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAG
TAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATT
TTGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTG
GCAGAACTTTTGCCTACCCCCTTCTGGTCCTGGGCTTTTTTTGGTTGTTA
GATCAATAATAATTGTCACCACTTGTTTACCTTTATTCCGCCTTCTCTCC
TTGCTTCCACTTCCTCCCGAACTTCCTTCCGTTTCTGTTATCCTCTCCCT
ATTTTTTTTTCCCTTCCTTACCCCCATTTCTTTACCTTTCTCTTTTTTAT
TTCTATTCTCCTTATCCCTACATCTCCCGCCCCATAACCCTCTCTATTTC
TTCCCTCTTATATTATCCCCCG

Query= MSMg01no352_b09.b1 MSMg01no352_b09.b1 CHROMAT_FILE:
MSMg01no352_b09.b1 PHD_FILE: MSMg01no352_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:30 2005
         (597 letters)



>mm_chr1_97005726_97006726
          Length = 1001

 Score =  880 bits (455), Expect = 0.0
 Identities = 470/477 (98%), Gaps = 4/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgttgttctattttctttcatattagtttttaatcgtactcatttgatgcta 63
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 477 ggaattcttgttgttatattttctttcatattactttttaatcgtactcatttgatgcta 418

                                                                       
Query: 64  ttagtgatgataaagcaaaagatacaagaaacaatatttatttgtattagaaaatgtcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttagtgatgataaagcaaaagatacaagaaacaatatttatttgtattagaaaatgtcct 358

                                                                       
Query: 124 ttacagagcattttattaacacat----attaacaacctgacaaattttgctcatcagta 179
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 357 ttacagagcattttattaacacatattaattaacaacctgacaaattttgctcatcagta 298

                                                                       
Query: 180 tttctcgtgctagtgtagtagtaatctcacacagtagagattactacggagcaaacaacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttctcgtgctagtgtagtagtaatctcacacagtagagattactacggagcaaacaacc 238

                                                                       
Query: 240 agaacagaacaaaggttaaacttcacaccttctagcctttagacaacacagttagctctt 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 237 agaacagaacaaaggttaaacttcacaccttctagccttcagacaacacagttagctctt 178

                                                                       
Query: 300 tcactgcctttacatttgaatgaaatttaattttttcgtgtgtgtctcagctctactaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcactgcctttacatttgaatgaaatttaattttttcgtgtgtgtctcagctctactaac 118

                                                                       
Query: 360 ttgatactgcatcagctctctttgggttttggccctagtcttggaggggactaactggca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttgatactgcatcagctctctttgggttttggccctagtcttggaggggactaactggca 58

                                                                    
Query: 420 tctctttgggcctttagttttccaatcattctgcagaatttcagactcaatagtctg 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  tctctttgggcctttagttttccaatcattctgcagaatttcagactcaatagtctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1001
Length adjustment: 10
Effective length of query: 587
Effective length of database: 991
Effective search space:   581717
Effective search space used:   581717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)