Query= MSMg01no352_c09.b1 MSMg01no352_c09.b1 CHROMAT_FILE:
MSMg01no352_c09.b1 PHD_FILE: MSMg01no352_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:35 2005
(484 letters)
>mm_chr1_131836867_131837750
Length = 884
Score = 888 bits (459), Expect = 0.0
Identities = 475/483 (98%), Gaps = 6/483 (1%)
Strand = Plus / Plus
Query: 5 gaattctcttcttcatgtaattcacaattcagaattcataataagttctttcattgttca 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcatcatgtaattcacaattcagaattcataataagttctttcattgttca 264
Query: 65 tgaatgcaaatatttgtcaggatgacccagtggtacaaaacaaaacaacaa---tataaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 tgaatgcaaatatttgtcaggatgacccagtggtacaaaacaaaacaacaacaatataaa 324
Query: 122 aaaaaaaacttttagaaagaaatttcatcttggatatctatttcccacatacctgatgct 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaa---cttttagaaagaaatttcatcttggatatctatttcccacatacctgatgct 381
Query: 182 tttccaggttgaaaacttttgggctatgtttggatgagtgtggatagccatgctgtcctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttccaggttgaaaacttttgggctatgtttggatgagtgtggatagccatgctgtcctt 441
Query: 242 aggatctggtaaacctctgttgcttcctctaagaataccatttgatactaatattccatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggatctggtaaacctctgttgcttcctctaagaataccatttgatactaatattccatt 501
Query: 302 tagtgtgcagagcatgaagcatcataagtcaattaaaatttagagtcttgcacttggggt 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tagtgtgcagagtatgaagcatcataagtcaattaaaatttagagtcttgcacttggggt 561
Query: 362 cctctatcaaataattctcagataaatttattttataatgttctttttccagttctgtga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctctatcaaataattctcagataaatttattttataatgttctttttccagttctgtga 621
Query: 422 tcaatataccaagttgtcttactctggttcctcaggctggacttaaaaatcactctgtag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcaatataccaagttgtcttactctggttcctcaggctggacttaaaaatcactctgtag 681
Query: 482 cct 484
|||
Sbjct: 682 cct 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_c09.g1 MSMg01no352_c09.g1 CHROMAT_FILE:
MSMg01no352_c09.g1 PHD_FILE: MSMg01no352_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:35 2005
(442 letters)
>mm_chr1_131978829_131979673
Length = 845
Score = 810 bits (419), Expect = 0.0
Identities = 438/445 (98%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 1 ttaaacactggagctatcctgatactgtatctagaattcttaagacatttgaaagtacag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 645 ttaaacactggagctatcctgatagtgtatctagaattcttaagacatttgaaagtacag 586
Query: 61 agcagatttcatagcaggaagctttcagagactggtacactgtgtgggttgtgaaagctc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 585 agcagatttcatagcaggaagctttcggagactggtacactgtgtgggttgtgaaagctc 526
Query: 121 agagcactgttttctccctattacaaataaggcaaggacggcaaattcaagcagatagaa 180
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 525 agagcactgttttctccctattacaaataaggcaagcatggcaaattcaagcagatagaa 466
Query: 181 gtcatttgggggctttcagaaacagccactctgctgcaataaaggaactcatttgatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtcatttgggggctttcagaaacagccactctgctgcaataaaggaactcatttgatagt 406
Query: 241 aatgtttaaaaaaaaaatcagtcctctatgggatgatttttcccccttctatgtatgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aatgtttaaaaaaaaaatcagtcctctatgggatgatttttcccccttctatgtatgaat 346
Query: 301 gatgttttgatcaggatttacaaagagagagagaga-aa--aaatgctgacttgtgaaga 357
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 345 gatgttttgatcaggatttacaaagagagagagagagaacaaaatgctgacttgtgaaga 286
Query: 358 aaaatcatcaaagtttctttcactaaatgacaacagtaaagatgagaagagacagcaaca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaatcatcaaagtttctttcactaaatgacaacagtaaagatgagaagagacagcaaca 226
Query: 418 ccaacctgagcctttgtaggatccg 442
|||||||||||||||||||||||||
Sbjct: 225 ccaacctgagcctttgtaggatccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 845
Length adjustment: 10
Effective length of query: 432
Effective length of database: 835
Effective search space: 360720
Effective search space used: 360720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
