BAC Information

Click to search

BAC

Clone NameMSMg01-352F03
Chromosome1 (Build37)
Map Location 160,071,245 - 160,071,663
singlet/doubletsinglet
Overlap genenone
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F03.T7 (MSMg01no352_f03.b1)MSMg01-352F03.TJ (MSMg01no352_f03.g1)
ACCAG463475AG463476
length894766
length of high quality
(start - end)
84 (66 - 149)420 (86 - 505)
definitionCHROMAT_FILE: MSMg01no352_f03.b1 PHD_FILE: MSMg01no352_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:49 2005CHROMAT_FILE: MSMg01no352_f03.g1 PHD_FILE: MSMg01no352_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATTTTTTCNTCGCTATACAACTCCTATATCCAGAGGATCCGCG
NAATTCTTCCACTTCCCTAGCTCTGACTTTCTTCTTCCTATGCAGTTTCT
AAAGAGAAAGGATTGTGAAGGTCCAGAGGTTCACACACCCTCAAGTTCAC
AACCANCNNNNTCCTTAAATAACTAGGCTGAGATAACATAATACAGACGG
AGGAGGGGGGACTTCTTGATCTGCCCAACCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNTNNNNNCNNTCCNCCCCCCCTTCCNNNN
NCCNCNNNCNNCCCCCCNNCCCCCCCNCCCTCTTTCCCCCCTTTCCCCTT
TCCTCCTTCTCCCCTCCTTCCTCCTTTNCTTTTTTTTTCNTTTTTTTTTT
TTTTTTTCTTTTCCCCCTTTCCTTCCCTTCCCCTTCCCTCCTTCTTTCCT
TTTCCTTCTTCCTTTCCCCTTCCCTTCTTTTTTTTNCTTCCTCCTTCTTC
CCCTTCTTTCTTTTNTTTTNCTNTTTTTTTTTCTTTCTTCTTCCCTTTTT
TTTCTTTTCTTTTTTNNTCCNTTTCCCTTCCTTCCTCTTCCTCCCTTTTC
TTTTTTTNNTTCCTTTTTCTCCTTTTCCCCCCCCTCCCCCTTTTTCTTTT
TTTTTTCCCCCTCCCCCCCTTTCCTTTTTCTTCTTTTCCCTTTTCCCCCC
TTCCTCTTCCTTTTTTCTTTTTCTCTCCCACAACACCCCCCCCG
CCTTCATCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTATGCTGTATT
CTCTACAATAATCTCTCCTAAAATATGGAGAAAACTCCTTACTTGAAGGG
GAAAGTAAATTAACACATTCTCAGTACATTAATTTCCCAGAGGTCGTTAG
GAACACTCATCAGACTGTGGAAAAATGAGAACTTTGGAAGTCAGAATCTC
TTTCTCCCCTATATAATTGCTTGTCGCGTTTTCTAGATTAACAACCTTCT
TGTACACTTTATGTGTCTGCCAACAATCCATGGGAAATCCCACCAGGATT
ATTGGCCATAAATTCCTAAACTTTGCATGTATACCTTGAATCCAATGGCT
AACTTCTAACCAAATGAATGAGTGAATGAATGAATGAGTGAATGGATTGA
AAAAGTTTAGCACCATGGACCACAAGGAGTAGTGGAGATGCTAGGCTTTG
TTTATGGATAACTTGCAGGGAAGATGGAGCTTGAAAGAATGAAAATGTCC
ACGCCACGCCCGAGTCTGACATTGTTCCAGGTGTCCCCCTCCCTTCCCAT
TTGCTCCGCCGACAACTCCTCTTGCGCTCTTTCACCCTCATGTGTCCGCT
CCCTCTCTTCCTCTTCTAAATTTCCTTATCGGCTCTATATTTTTATCTAT
CCATCTCCATTCTACACCCCGCCCCCTTAATGCCTATTATTGATTGCTCT
TTTTTTTTCCCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f03.g1 MSMg01no352_f03.g1 CHROMAT_FILE:
MSMg01no352_f03.g1 PHD_FILE: MSMg01no352_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:49 2005
         (420 letters)



>mm_chr1_160071137_160071956
          Length = 820

 Score =  704 bits (364), Expect = 0.0
 Identities = 406/430 (94%), Gaps = 21/430 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctatgctgtattctctacaataatctctcctaaaatatggagaaaactccttacttg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 527 tttctatgctgtattctctacaataatctctcctaaaatatagagaaaactccttacttg 468

                                                                       
Query: 61  aaggggaaagtaaattaacacattctcagtacattaatttcccagaggtcgttaggaaca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 467 aaggggaaagtaaattaacacattctcagtacattgatttcccagaggtcgttaggaaca 408

                                                                       
Query: 121 ctcatcagactgtggaaaaatgagaactttggaagtcagaatctctttctcccctatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctcatcagactgtggaaaaatgagaactttggaagtcagaatctctttctcccctatata 348

                                                                       
Query: 181 attgcttgtcgcgttttctagattaacaaccttcttgtacactttatgtgtctgcca-ac 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 347 attgcttgtcgagttttctagattaacaaccttcttgtacactttatgtgtctgccaga- 289

                                                                       
Query: 240 aatccatgggaaatcccaccaggattattggccataaattcctaaactttgcatgtatac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aatccatgggaaatcccaccaggattattggccataaattcctaaactttgcatgtatac 229

                                                                       
Query: 300 cttga-atccaatggctaacttctaaccaaatgaatgagtgaatgaa--------tgaat 350
           ||| | |||||||||||||||||||||||||||||||||||||||||        |||||
Sbjct: 228 ctt-acatccaatggctaacttctaaccaaatgaatgagtgaatgaatgaatgagtgaat 170

                                                                       
Query: 351 gagtgaatggattgaaaaagtttagcaccatggaccacaaggagtagtggagatgctagg 410
           |||||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 169 gagtgaatggattgaaaaagtttagcaccat---------ggagtagtggagatgctagg 119

                     
Query: 411 ctttgtttat 420
           ||||||||||
Sbjct: 118 ctttgtttat 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)