Query= MSMg01no352_g24.b1 MSMg01no352_g24.b1 CHROMAT_FILE:
MSMg01no352_g24.b1 PHD_FILE: MSMg01no352_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:59 2005
(363 letters)
>mm_chr1_85260619_85261381
Length = 763
Score = 582 bits (301), Expect = e-170
Identities = 340/357 (95%), Gaps = 7/357 (1%)
Strand = Plus / Minus
Query: 7 gaattcctttacctattcctttgttgtctcattttgtttttcttttttgcagtactaggg 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 456 gaattcctttacctatttttttgttgtctcattttgtttttcttttttgcagtactgggg 397
Query: 67 atcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctctg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctctg 337
Query: 127 ttttttctaaacagtgtgtgagcatgttcgctgcttattacttcgtggcatttgtagttt 186
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 336 ttttttctaaacagtgtgtgagcatgttcgctgcttattacttcatggcatttgtagttt 277
Query: 187 agttgtgacaccgtggcacttttgtatttctgactaatttgctgcattttctagttggat 246
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agttttgacactttggcactcttgtatttctgactaatttgctgcattttctagttggat 217
Query: 247 cagtgcatcatgcatcacatgtgaaactgcagtattttaatttaccgtctgtgaaataat 306
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 216 cag-------tgcatcacatgtgaaactgcagtatttgaatttaccgtctgtgaaataat 164
Query: 307 ttagttccaactcagattttatggagagttcatttcagattccacatgaaaccaggg 363
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 163 ttagttccaactcagattttatggggagttcatttcagattccacatgaaaccaggg 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_g24.g1 MSMg01no352_g24.g1 CHROMAT_FILE:
MSMg01no352_g24.g1 PHD_FILE: MSMg01no352_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:59 2005
(366 letters)
>mm_chr1_87501681_87502447
Length = 767
Score = 634 bits (328), Expect = 0.0
Identities = 355/364 (97%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 1 atagcatgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcgtgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 260
Query: 61 ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 320
Query: 121 tcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcatttatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcatttatgc 380
Query: 181 ctcccttagcttccgacatatacaaagctgtatgtttccccttagccactgcctttgctg 240
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgcctttgctg 440
Query: 241 tgtttcagatttaataatttttagacctcagttcttttttagtgtaggagaaagggtcac 300
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 441 tgtctcagatttaataatttttagacttcagtgcttttttagtgtaggagaaagggtcac 500
Query: 301 acttttgcttgtcttaccccatt-aaaaaacattacattcatttatttattgtatgtgtg 359
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 501 ccttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattgtatgtgtg 560
Query: 360 cagg 363
||||
Sbjct: 561 cagg 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space: 270606
Effective search space used: 270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
