BAC Information

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BAC

Clone NameMSMg01-352I16
Chromosome1 (Build37)
Map Location 142,204,152 - 142,325,957
singlet/doubletdoublet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352I16.T7 (MSMg01no352_i16.b1)MSMg01-352I16.TJ (MSMg01no352_i16.g1)
ACCAG463643AG463644
length745792
length of high quality
(start - end)		481 (68 - 548)379 (79 - 457)
definitionCHROMAT_FILE: MSMg01no352_i16.b1 PHD_FILE: MSMg01no352_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:08 2005CHROMAT_FILE: MSMg01no352_i16.g1 PHD_FILE: MSMg01no352_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,325,477 - 142,325,957)(142,204,152 - 142,204,530)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCAGTCCCTGACCCCTGCAAGGTAAAAGGTGATGCTGAGGA
ATGTTCCAAGTTTCTTACAGTTCAAACCCTGACTCATTGCTTTGATATCT
CATATAATATTTAGTCCAAGATTTTGTCCTATAAAATATAACCAGAATTG
AGAAATTAGGAGATATCTCCAATTGGGAGTCTGAATACCTCTTGTCTATC
TCTGACAGCAAAGATAATTCTAGCATGGTAATTTCTTACCACACCATGCA
GAATTATTATCTTAAATATCTGCCTTAAAACCGAAAGTAGAAAACAGGAG
CCTATACTTTTAGCACTGTTATTCTAAAATTAGTAAAGCAGAGCTAAATT
TTATATTTAAATACATGTGAAATGCAGCTTGCAAACGTTTGGAGAGAAAA
GTTATCAAAAGATTGAAAATGAAGAGAGATAGAAAGGATGGAGGATGCCT
ACTTTGCTCTCAGGAGATCCTGGTCTTTAAGGGCAGAGCCTTGAAGGTAG
ATCACCTCTCTGGGACCACATTGGAATCTGTAGTACTCTCCGAACTTGCA
CATCCATTCTCGTGGGACACAAAATCACCACGTAATAATCCTATTTAAGG
CATAATAGAAAAAGGCATATATACAATCACGCTTTAAGTAACCCTTATTC
AACTATTTAAGATCCTTTTCTTTACCTATGATCACCTTGGCATTA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGATTACTGGTCATGTCACC
TCCAGATCTTGAGTCCTTTCTTTAGTGCGCAGTTTTCATAAGGATTTTTA
TCCTCATTCTGTGCTGCATAACTACAAGAGTATTATCTACTTTTATGCTT
TATGTACTTTGGATTAAGGTATGACATTTTTATCCTGGGAGGTACCGATA
TACAAGTGTACATTTCTTTTGTTGTTCTTTTTTGTTTAACACTATAGACA
GTTATATGTCTTCAAGTGTTATTTCCTGGAAGATATTTTATATTCTAATT
TGGCAGCCCTTTTATTGCATTTAACTGAACATATTTTAAAATATGTTTGC
TAAAATATGTCTCGTTTTTGCTATAAATTTCTAATGGTATGATATGCATT
ATGAAGGTTAGAAGTGTCTTCTCTCATAGCTATAAAGCTTTGTAACACCC
GCGAGTCTTAGCCATATGATTTTTACCCCTCAGTCTCTCCTTTCCTACCC
CCCTTTTCCTTATGTTTTGCGCCTCTTTTCTCGCCTTTCCTGTCGTAGTT
GCTCCCTCTATTTATACCGGTTTTCCTTATTTCTCTTTTTCTTTTTGTCT
CCTCCCCGTTTTCCCCTCCTCCTCCCGTTTCTTCCCTCCCCCCTTCCATT
TCTCCCTCTCCCCCCTTTTTCTCCTCCCTAAAATATTATACAGTTATCCC
CTCTTCTTCTTTTTTCCCCCTTTCTCTTCCTCCTTACTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_i16.b1 MSMg01no352_i16.b1 CHROMAT_FILE:
MSMg01no352_i16.b1 PHD_FILE: MSMg01no352_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
         (481 letters)



>mm_chr1_142325277_142326157
          Length = 881

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacccctgcaaggtaaaaggtgatgctgaggaatgttccaagtttcttacagttcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacccctgcaaggtaaaaggtgatgctgaggaatgttccaagtttcttacagttcaaac 622

                                                                       
Query: 61  cctgactcattgctttgatatctcatataatatttagtccaagattttgtcctataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgactcattgctttgatatctcatataatatttagtccaagattttgtcctataaaat 562

                                                                       
Query: 121 ataaccagaattgagaaattaggagatatctccaattgggagtctgaatacctcttgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaccagaattgagaaattaggagatatctccaattgggagtctgaatacctcttgtct 502

                                                                       
Query: 181 atctctgacagcaaagataattctagcatggtaatttcttaccacaccatgcagaattat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 atctctgacagcaaagataattctagcatggaaatttcttaccacaccatgcagaattat 442

                                                                       
Query: 241 tatcttaaatatctgccttaaaaccgaaagtagaaaacaggagcctatacttttagcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcttaaatatctgccttaaaaccgaaagtagaaaacaggagcctatacttttagcact 382

                                                                       
Query: 301 gttattctaaaattagtaaagcagagctaaattttatatttaaatacatgtgaaatgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattctaaaattagtaaagcagagctaaattttatatttaaatacatgtgaaatgcag 322

                                                                       
Query: 361 cttgcaaacgtttggagagaaaagttatcaaaagattgaaaatgaagagagatagaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcaaacgtttggagagaaaagttatcaaaagattgaaaatgaagagagatagaaagg 262

                                                                       
Query: 421 atggaggatgcctactttgctctcaggagatcctggtctttaagggcagagccttgaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggaggatgcctactttgctctcaggagatcctggtctttaagggcagagccttgaagg 202

            
Query: 481 t 481
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_i16.g1 MSMg01no352_i16.g1 CHROMAT_FILE:
MSMg01no352_i16.g1 PHD_FILE: MSMg01no352_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
         (379 letters)



>mm_chr1_142203952_142204730
          Length = 779

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggattactggtcatgtcacctccagatcttgagtcctttctttagtgcgcagttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggattactggtcatgtcacctccagatcttgagtcctttctttagtgcgcagttttca 260

                                                                       
Query: 61  taaggatttttatcctcattctgtgctgcataactacaagagtattatctacttttatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggatttttatcctcattctgtgctgcataactacaagagtattatctacttttatgc 320

                                                                       
Query: 121 tttatgtactttggattaaggtatgacatttttatcctgggaggtaccgatatacaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgtactttggattaaggtatgacatttttatcctgggaggtaccgatatacaagtg 380

                                                                       
Query: 181 tacatttcttttgttgttcttttttgtttaacactatagacagttatatgtcttcaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatttcttttgttgttcttttttgtttaacactatagacagttatatgtcttcaagtg 440

                                                                       
Query: 241 ttatttcctggaagatattttatattctaatttggcagcccttttattgcatttaactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatttcctggaagatattttatattctaatttggcagcccttttattgcatttaactga 500

                                                                       
Query: 301 acatattttaaaatatgtttgctaaaatatgtctcgtttttgctataaatttctaatggt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 acatattttaaaatatgtttgctaaaatatgtctcgtttttgttataaatttctaatggt 560

                              
Query: 361 atgatatgcattatgaagg 379
           |||||||||||||||||||
Sbjct: 561 atgatatgcattatgaagg 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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