BAC Information

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BAC

Clone NameMSMg01-352M08
Chromosome1 (Build37)
Map Location 90,162,089 - 90,162,454
singlet/doubletsinglet
Overlap gene6430706D22Rik, LOC100038822
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M08.T7 (MSMg01no352_m08.b1)MSMg01-352M08.TJ (MSMg01no352_m08.g1)
ACCAG463815AG463816
length751792
length of high quality
(start - end)
370 (51 - 420)345 (82 - 426)
definitionCHROMAT_FILE: MSMg01no352_m08.b1 PHD_FILE: MSMg01no352_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:26 2005CHROMAT_FILE: MSMg01no352_m08.g1 PHD_FILE: MSMg01no352_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTTTTACCTCATCATAGTTATCCTTCCCACAGCCTGGA
GAGCCTATGCATGGTGCTGAAATAGCTGTACTGGGCCACACTGCCTTACC
AGTAGGTTCAGAATTGTGCTCTTGAAGGCCAGAGCTCAGCTGAGAATGGC
TGGGGCTCCGTGATGGGCTGCCCTCTGGAGAGGGACAGCTCCTTAGAAGA
CAGCTCTTTGTTTTGACAGACTTTCCATTTCCCCTCAGGTCTTCTAAAGC
TTCACCTGGCCTTTCTGTCTTTTCTCTGCCGAAAGGTGAACTGGGCCTGC
AGGTTTCTACATCCTGACGGCTGCCTGGGCTCTTAGAACCACTTCTGTAC
ACATCGGCAGCCCAAGACTCTGCGGGGCCAGTCAGGTGAGGCTGTTTCCC
AGAATACAGGCTATATTCCTGATGAAGTTTGTCCAATTCGATTTTAATCT
CTCCATACCACTTTCTCTACTTGACTTGGAATAATCCTTGGACTGGGAAC
CCCCTTGCCCGCTGCTTTCACCCCCTGGATCGTCCTCACCTTATTCTTCC
GCTTCCGCCTAATTCCTACTTCTCTCCGCGCCCTCCCCCTGGCCCCCTCC
CCTCCGTCCTGCATCCTCCCCCCCTCTTTTTTCCCCCCCTTCCCCCCCCC
CTCTTTTATTCCCCTCCCCCCCTCCTTTTTACCCTTCCCTCCCCTCCCCT
G
NNCCGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAATTTGGAAATGAACA
AACCAAATATCTCATTTAGAAATGGGGTACAGAGCTAAACAGAGAATGCT
CAACAAAATAATCTGTAATGGTTGAAAAGCACTTAATGAAATATTCAAGA
TCTTTTGATATCATGGAAATATCTCTCAAAAATAATCTGAGATTCTACTT
AACATTCATTAGAACAGCTAAGGCCAAAACACAAACAACTGTGCATGCTG
AAGTGGATGTGGAAAAAGGAGACTATTCCTTCATTGCTAATGTGAGTGCA
AATGTGTCCAACCATTCTGGGAATAAATTTGTCAATAATTGAGAAAATTT
GGAACATGTCTACCTCAAGACTCACCTATATAACTCATTCTCAAATACCC
AGAACATGTTTCACCATTCAAAATATAAACTTGTTCAACTCTTTTTATAG
CAGCCTTTATTAAAATAACCCAGAAAATGGTAGTAACCCCGATATTCCCT
TAACTGAATAATTGGATTCACAAAATTTCCCCCTCTTTCCCCCCGGGACC
ATCTTCCCTCTCCCTCTTTATCCTCCTCCCAACCTTTTTTCTCTTTTTCT
TTTTTCCCCTATCCGTTGCCACCCCATTCTCCTCCTTTCTTCCCTTCCCC
CAACCTTTCTCTCTCTCCCCCTTTTCCCCTACCTCTCTTTTTTTCTCTCT
CCCTCTCTCTCTTTATTCGCCCTATCTTTTTCCCTTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m08.b1 MSMg01no352_m08.b1 CHROMAT_FILE:
MSMg01no352_m08.b1 PHD_FILE: MSMg01no352_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:26 2005
         (370 letters)



>mm_chr1_90161885_90162654
          Length = 770

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttttacctcatcatagttatccttcccacagcctggagagcctatgcatgg 64
           |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcttttttaagctcatcatagttatccttcccacagcctggagagcctatgcttgg 264

                                                                       
Query: 65  tgctgaaatagctgtactgggccacactgccttaccagtaggttcagaattgtgctcttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgaaatagctgtactgggccacactgccttaccagtaggttcagaattgtgctcttg 324

                                                                       
Query: 125 aaggccagagctcagctgagaatggctggggctccgtgatgggctgccctctggagaggg 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 aaggccagagctcagctgagaatggctggggctccgtgacgggctgccctctggagaggg 384

                                                                       
Query: 185 acagctccttagaagacagctctttgttttgacagactttccatttcccctcaggtcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagctccttagaagacagctctttgttttgacagactttccatttcccctcaggtcttc 444

                                                                       
Query: 245 taaagcttcacctggcctttctgtcttttctctgccgaaaggtgaactgggcctgcaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaagcttcacctggcctttctgtcttttctctgccgaaaggtgaactgggcctgcaggt 504

                                                                       
Query: 305 ttctacatcctgacggctgcctgggctcttagaaccacttctgtacacatcggcagccca 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 ttctacatcctgacggctgcctgggctcttagaaccacttctgtacacatcgacagccca 564

                 
Query: 365 agactc 370
           ||||||
Sbjct: 565 agactc 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)