BAC Information

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BAC

Clone NameMSMg01-352M10
Chromosome1 (Build37)
Map Location 13,458,560 - 13,458,899
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812
Downstream geneEG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M10.T7 (MSMg01no352_m10.b1)MSMg01-352M10.TJ (MSMg01no352_m10.g1)
ACCAG463819AG463820
length833806
length of high quality
(start - end)
---344 (80 - 423)
definitionCHROMAT_FILE: MSMg01no352_m10.b1 PHD_FILE: MSMg01no352_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:26 2005CHROMAT_FILE: MSMg01no352_m10.g1 PHD_FILE: MSMg01no352_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATCTATXXXXXXXXXXXXXXXXXXXXXXCTATTCGGACACATCCGCG
GAATTCCATTCTCCCCCATCATAGTATGCCCAAAGTCAAATTCAATGATG
TGTTTATAAAAAGATAAAGAGAGAGGCGATATGTTTTGGTCGGAGGTGTA
CTCAGCTCTGCTCTCTCCTTCCCCTCCCTCTTCCCCCCCCCCCTCCTTTT
CCCCCCCCTTTCCCCCCCCCCTCTCCCCCTTTCTTCCTCCCTCCTCCCTC
CTCCCCTTTCCCTCTCCTCCCCCCCCCCCCCCCTTTTTCTTCTTCTCCTC
CCCCCCCCCCCCTCCCCTCCTTCTTCTTTCCTCCCCCCCCACCCCCCCCC
CTCCCTCCCCTTCCTCTCCTCCCCCCCCCTCCCCCTCTTCCCCCCCCCCT
CTCCCTCCCCCCCCCCCCTTTCCCCTCCCCTCCCCCCTTTTCCCCCCCCC
TCCTCCCCCCCTTCCTTCCCCCTTTCCCCCCCCTCCCCCCCCCTCCTCCC
CTCCCTCCCCTTCCCTCCCCCCTTTTCCCTCCTCCCTCCTCCCCCTCCCC
CCCCCCCCCCCTTTCTCCCCTTCTCTCCCCCCTTTCCCCCTCCTCTCCCC
CCCTTCCTTCCCCTCCCCCTCCTTCCCCCTTCACCCCCCTTTTCCCTTCC
CCCCTTCCCCCCCCCCTTCTCCCCCCTCCCCCCTCCCCTCCTCCCCCCCC
CTTCCCCCCCTCCCCTCTCTTCCCCCTCCCTCCCCCCCCTCTCCTATTTC
CCCCTCCCTCCTCCCCCCCCCCCTTCTTTTCTTTCCCCCTCCCCCCCCCT
CCTTTTTTCCCCCTTCTCCTCCCCCCCCTCCTN
NCTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGGCTCCTCCAGTAGAAT
GCCTAATGTTGCTTTTCTTAGGTCATGAGGTTAATTAAGACACTCCAACT
TGAGTCAAGATGAGAACCTAGATTTTTGGATGAATACTTTTATAGAACCT
TTCAGATACTCTTCTTCTTCATCATCTTTTTAAGGAGAAAATTTGAAATA
AATAATCTCTTTGATGTGGCAGAGAATCTATATGGGTATTACAAATGTAA
CAAGACTCCAGCTTTGACAGCATGTAGCTATACATCCAGTTGTCACTCAG
CCATGCATGGGGAGTTACTCTGTGAGAGTGAGACTCAGTGTCAGGAGAGG
AGGCTGAGTGTAAAATGTCCACCATGGGCTCATGCCCTTGACTCGCTTGA
TCCGCTGATGCGTTTGCCTTTTTTGGAGGTTTACGTAACTCTTACGAGGT
GGACCCTTGCTGATACACTTTGGTTCATTACAACCTATTTCTCGTCTTTG
CCCCTTTGCCTTGTTCTTTTTTTTTCCCCCTCTTCATTCCCCCTTCCTTT
CTTCTTTTCTCTCTTCTTTGTCTCCCTTTTATCCTTTTTTCCTTATTGCC
TTTATCTTCCTATCCCTTTTTCCTCTCCTTCGTCCGTTTTTCTTTCCTCC
CCCCCTCCCTTTTTTTCCCTCTCCCCCCCTTTTCGCCTCCCATCTATATT
TCTCCATTTCTCCCTCCTCTTCTTTTCTTGCCGCCCTTCTCTCTCCCCTT
CCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m10.g1 MSMg01no352_m10.g1 CHROMAT_FILE:
MSMg01no352_m10.g1 PHD_FILE: MSMg01no352_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:26 2005
         (344 letters)



>mm_chr1_13458357_13459100
          Length = 744

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggctcctccagtagaatgcctaatgttgcttttcttaggtcatgaggttaattaagaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gggctcctccagtagaatgcctaatgttgcttttcttaggtcatgaggttaattaagaca 263

                                                                       
Query: 64  ctccaacttgagtcaagatgagaacctagatttttggatgaatacttttatagaaccttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctccaacttgagtcaagatgagaacctagatttttggatgaatacttttatagaaccttt 323

                                                                       
Query: 124 cagatactcttcttcttcatcatctttttaaggagaaaatttgaaataaataatctcttt 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 cagatactcttcttcttcatcatctttttaatgagaaaatttgaaataaataatctcttt 383

                                                                       
Query: 184 gatgtggcagagaatctatatgggtattacaaatgtaacaagactccagctttgacagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatgtggcagagaatctatatgggtattacaaatgtaacaagactccagctttgacagca 443

                                                                       
Query: 244 tgtagctatacatccagttgtcactcagccatgcatggggagttactctgtgagagtgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtagctatacatccagttgtcactcagccatgcatggggagttactctgtgagagtgag 503

                                                   
Query: 304 actcagtgtcaggagaggaggctgagtgtaaaatgtccac 343
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 actcagtgccaggagaggaggctgagtgtaaaatgtccac 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)