BAC Information

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BAC

Clone NameMSMg01-353A08
Chromosome1 (Build37)
Map Location 179,684,661 - 179,685,120
singlet/doubletsinglet
Overlap genenone
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik
Downstream geneAdss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353A08.T7 (MSMg01no353_a08.b1)MSMg01-353A08.TJ (MSMg01no353_a08.g1)
ACCAG464003AG464004
length754752
length of high quality
(start - end)
554 (56 - 609)460 (86 - 545)
definitionCHROMAT_FILE: MSMg01no353_a08.b1 PHD_FILE: MSMg01no353_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:46 2005CHROMAT_FILE: MSMg01no353_a08.g1 PHD_FILE: MSMg01no353_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCAAACAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCATCTCTGAAGAGACTGTCTTGGAATGTGTTAATC
CCAACGATGGGAGGAGAAAAACCACCCACCCAAATCAACACAATCAATTA
AAGAAGGCAACGAATTAAACAAATTTTTTATTTGTATACATTGCCTCCCC
CAATCCACAGTCGTGTTCGAGAGGTCAGTGTTGGACATTATAGAGCTCGG
GTAAGGGGACATCATAGAGCTCGGGTAAGGGGGCTACTGAATGGGGGGGG
GGTCTGGTGAACAAAACAGGTGGCCTTCCTCGAGGAGAAAATAAGCATAA
CAAGTAATAATTTAGTCCTAAGGACCTCCGGGAACAAAGACGTGGTTCTA
AGGTGGGTGGAATCGGGTAGTCAGAGGGTTGTGAGACAGTTGGGTTTTGA
AACAAAGACATGGTTGTTTCCTGGAACATACAGTACAGAACCATTTGAAG
TTAAGGTTACAGGTGGGGCCTAGACCTGTCTTTGAGAAGCACAGGTGTAA
CCATAAACAGGAATGAACTTACTTTGTCTTTAACTATAAGATGACTTCAA
GAGGCTGGTGAGATGACACAATGGTTACAATCACAGCAACTATCTATAAC
GGGATCTGGCGCTCTCCTCTGGCTGGAAGGTATCAAGCAAAGAAGAAGAC
TCCTGTTTTCCCATTAAAAAAAAAAAAAAAACCATGGACTTACTTCTCTT
TCCC
TTTCCCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAATTTCAACT
GCCTTTCTTAGTCTCTTAACATGGTCAACTAGGCATCACCAAGATTTGAA
AATCTACACAGGAAAGAATAAGGCCAAAATAAAACACCAGTCCATCTAGA
ATAGAATTCAGGGGATACAAAGATAAGAAATCTAGTGTAACTTCTTGTAT
TAAATAGAATATTATATATGAATCAATATTATGGGCATTATATATGCAGA
TTTATGACGGACTCATGTACTTACAGAGGTTGAGAAGCACTGTGATAGGC
CAACCCTCTGCAAGCTCCCCTGAAGGCTGTGAGGTTCCAGTCCTAGCCCA
AAGTTCTGAGAACTTGCATGGAGAGTACTAGTGTGTTAAGTCCTGGTCCA
AGTCTGAAGGCCTGGTTCAGTCCAAATGAGTTTCCTGCATTTAGATACTT
AGTCACTAATTGGTGGCCCTGTTTGGGTAGGTTTAAAAGATGTGGNCTTG
CTAGAGGAAATGTCATTAAGGACAGGATCTGAGATTTCAAAAGCCACATA
TCACTCCCAGTGTTCTCACTTGTAGTTATAGGTCCAGATGGAAGCTCTTA
AGTTGCTTGCTTAGCCACCATGCTTGTTTTGCCTGCTTTTCCCTTTACGA
TTCACCTCCTTGTGCCGTAACAAGCTCTAAAGGGCTTGCCGAAATACCCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_a08.g1 MSMg01no353_a08.g1 CHROMAT_FILE:
MSMg01no353_a08.g1 PHD_FILE: MSMg01no353_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:46 2005
         (460 letters)



>mm_chr1_179684461_179685320
          Length = 860

 Score =  882 bits (456), Expect = 0.0
 Identities = 459/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catataatttcaactgcctttcttagtctcttaacatggtcaactaggcatcaccaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catataatttcaactgcctttcttagtctcttaacatggtcaactaggcatcaccaagat 260

                                                                       
Query: 61  ttgaaaatctacacaggaaagaataaggccaaaataaaacaccagtccatctagaataga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttgaaaatctacacaggaaagaataaggccaaaataaaacgccagtccatctagaataga 320

                                                                       
Query: 121 attcaggggatacaaagataagaaatctagtgtaacttcttgtattaaatagaatattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaggggatacaaagataagaaatctagtgtaacttcttgtattaaatagaatattat 380

                                                                       
Query: 181 atatgaatcaatattatgggcattatatatgcagatttatgacggactcatgtacttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgaatcaatattatgggcattatatatgcagatttatgacggactcatgtacttaca 440

                                                                       
Query: 241 gaggttgagaagcactgtgataggccaaccctctgcaagctcccctgaaggctgtgaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggttgagaagcactgtgataggccaaccctctgcaagctcccctgaaggctgtgaggt 500

                                                                       
Query: 301 tccagtcctagcccaaagttctgagaacttgcatggagagtactagtgtgttaagtcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagtcctagcccaaagttctgagaacttgcatggagagtactagtgtgttaagtcctg 560

                                                                       
Query: 361 gtccaagtctgaaggcctggttcagtccaaatgagtttcctgcatttagatacttagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccaagtctgaaggcctggttcagtccaaatgagtttcctgcatttagatacttagtca 620

                                                   
Query: 421 ctaattggtggccctgtttgggtaggtttaaaagatgtgg 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaattggtggccctgtttgggtaggtttaaaagatgtgg 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)