BAC Information

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BAC

Clone NameMSMg01-353C07
Chromosome1 (Build37)
Map Location 71,632,197 - 71,632,406
singlet/doubletsinglet
Overlap geneFn1
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic
Downstream geneLOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353C07.T7 (MSMg01no353_c07.b1)MSMg01-353C07.TJ (MSMg01no353_c07.g1)
ACCAG464094AG464095
length770771
length of high quality
(start - end)
---210 (83 - 292)
definitionCHROMAT_FILE: MSMg01no353_c07.b1 PHD_FILE: MSMg01no353_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:55 2005CHROMAT_FILE: MSMg01no353_c07.g1 PHD_FILE: MSMg01no353_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTACTCTATTTAGAGTTGATAAGTCGACTGACTTACGAG
AGTGTGGTAGAGCCGAGGTGGAGTGTGACCTACAGATCTCTTGTACCTTG
TCTTCAGTGACTTAAATTGGAATCTCAAAATCACTCATTGTAGAAAGACC
TACACCGTGGAACTTATTAAACACTAGATTAGTCACCAGCCCATAACTGG
TTAAAGGCTCTGTTAAGAAAGTGGGGGTGTGACTAAAGCATTTGGACTGG
AAACAGAAAGAAGCCATTTCCTCTTCTGTGTAAAGGAAAACACAGTGAAG
ATCTGACGAAGAGGGAGAGTGAGATTGTCTCGACATATGTGAGATCTATA
ACTTCCATAAAGTTACACCTCTCCTCCTTGGAGAGAAAGGGGGCAGAGCC
AATCTCTTTGCCTCCTCTCCAGATCTGTCATGTTTCCCCTTGGCTCAACC
CAATGAGAAGCAAAGCTTCAACTTTTGATCTTGGAGGACTGTAGGAATAA
ATAGAATCTGTGCCTGACTCATGAAAATAAGCATCAGTCTTTATTTGAAA
ATCCTTCAAGTGTTGCGACATGCGTGTGTGTGTGCTATGCTTTTGTCCCA
CTTCCCCCACCTTACCTTTCACTTGCAACCCCAGTCTTCCTTCCTGTCCT
TTCCTCCTCTCGTTTCCTTTCCCTTCTGTTTTTTCCTGGCCTTTCACCCA
ATTTTCATTCCGCTTTTCTN
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATCAACTGCATAC
AAAGTGTCTTCAATACAATTTTTTCCGTATAAAAATACTGGGAAAAATTG
ATAAATAACAAACAGGTAAGAGAAAGGTATTTCTAGGCAATCTGAATTGT
TGGGACAAAGTGAGTCCTGTGGAAGGGGTGTTTGAACACACAGCCACAGG
CCATGTCCTGACAGGGCTGCAGGTCAGATGGCAAAAGAAAGCAGAGGTGT
CTGGCTGACTTTCCTGCTCAAGGTCTTGGTTATTAACATTCAGTACATTT
CCTCTTAGTTGACTAACTGTGTTTCCCTATTGATCCCTGACCAAACCATA
ATAACTTTTGATTCTCTTAAACGACACTGAGCAGTACTGAAACCCTGAAG
CAGAACAGGGCGACCAACTGTCACCATTGAGGATAGAAGTCTCATAACAT
CCCACGGAGCGATGCTTGTAGAAGCTGTACCTTGTGCTGAAGCTGATAAT
ATGGTTTCAGATCCAAAGGCTTATGGTGGATAGGACCACTCAATAATTGT
GGGTCCGGTAACCTCTCTGGCCTGTGGATTGACTTTGTTAAAAATATCTC
CGTCTTTTGGGACTGTTACTACCATGCTTCACCATTCCCCTCTTCCCGTT
TTTTTCCCTTCCTGGCTCGAAAAAACCCTTCGTCCCCCAACATCACCGCC
CTTTTAATTAATAATTCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_c07.g1 MSMg01no353_c07.g1 CHROMAT_FILE:
MSMg01no353_c07.g1 PHD_FILE: MSMg01no353_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:55 2005
         (210 letters)



>mm_chr1_71631997_71632606
          Length = 610

 Score =  391 bits (202), Expect = e-113
 Identities = 208/210 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttatcaactgcatacaaagtgtcttcaatacaattttttccgtataaaaatactggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttatcaactgcatacaaagtgtcttcaatacaattttttccgtataaaaatactggg 260

                                                                       
Query: 61  aaaaattgataaataacaaacaggtaagagaaaggtatttctaggcaatctgaattgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaattgataaataacaaacaggtaagagaaaggtatttctaggcaatctgaattgttg 320

                                                                       
Query: 121 ggacaaagtgagtcctgtggaaggggtgtttgaacacacagccacaggccatgtcctgac 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacaaagtgagtcctgtgggaggggtgtttgaacacacagccacaggccatgtcctgac 380

                                         
Query: 181 agggctgcaggtcagatggcaaaagaaagc 210
           || |||||||||||||||||||||||||||
Sbjct: 381 agtgctgcaggtcagatggcaaaagaaagc 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)