Query= MSMg01no353_c18.b1 MSMg01no353_c18.b1 CHROMAT_FILE:
MSMg01no353_c18.b1 PHD_FILE: MSMg01no353_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:57 2005
(590 letters)
>mm_chr1_79127440_79128429
Length = 990
Score = 1065 bits (551), Expect = 0.0
Identities = 578/587 (98%), Gaps = 3/587 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggaaagacaggatgacataattgagaccctgtttcaaacaaacaaacaaaca 64
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctagaaaagacaggatgacata-ttgagaccctgtttcaaacaaacaaacaaaca 264
Query: 65 aacacaaaaccaaacaaacccctccatataaacacaaatggaacaataacaaatgccata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacacaaaaccaaacaaacccctccatataaacacaaatggaacaataacaaatgccata 324
Query: 125 aggcacactgcaatgtatcaggaggggctgcctgttagaggaaggagcaatagcccagaa 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcacactgcaacgtatcaggaggggctgcctgttagaggaaggagcaatagcccagaa 384
Query: 185 ctgtggggaatgtggagataaacctggctgaggaagaactgggatggaaaattaggtacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtggggaatgtggagataaacctggctgaggaagaactgggatggaaaattaggtacc 444
Query: 245 acaagctcccatgactccatgaagagtcctgagccattgtacaccgtgtatgatctgaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaagctcccatgactccatgaagagtcctgagccattgtacaccgtgtatgatctgaca 504
Query: 305 ttgctcccggtatactggtgagacaatacaaaggacccacggtggctgcttccctgtctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgctcccggtatactggtgagacaatacaaaggacccacggtggctgcttccctgtctt 564
Query: 365 cacagaaatctccacgggggtatggatattggaccctcccctacaggctgcttgatagac 424
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 565 cacagaaatctccacgggggtgtggacattggaccctcccctacaggctgcttgatagac 624
Query: 425 cagtcagattctgctaaacaacacaggttggacc-caaatttgctcttgaatacataaac 483
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 625 cagtcagattctgctaaacaacacaggttggacctcaa-tttgctcttgaatacataaac 683
Query: 484 ataccctaattggctaaaaagctatatataagcttgtataataaaaaataaagttagctc 543
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 ataccctaattggctaaaaagctacatataagcttgtataataaaaaataaagttagctc 743
Query: 544 tacactgtgatgctggtctctgtagtctgaatcctgggcatcttcat 590
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 744 tacactgtgatgctggtctctggagtctgaatcctgggcatcttcat 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_c18.g1 MSMg01no353_c18.g1 CHROMAT_FILE:
MSMg01no353_c18.g1 PHD_FILE: MSMg01no353_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:57 2005
(477 letters)
>mm_chr1_79315828_79316704
Length = 877
Score = 565 bits (292), Expect = e-165
Identities = 310/316 (98%)
Strand = Plus / Minus
Query: 162 tcatttaaacacatgttatttagggattttaagacatttcaatgaaagaatatgtcataa 221
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 877 tcatttaaacatatgttatttagtgattttaagacatttcaatgaaagaatatgtcataa 818
Query: 222 tttatttatccactctattgaatatttatgttgattccaatttctatatactataggtaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tttatttatccactctattgaatatttatgttgattccaatttctatatactataggtaa 758
Query: 282 tgtcacagtgacttttgaacagctttatgcttaaatctctgatcactttagttgaattca 341
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 757 tgtcacagtgacttttggacagctttatgtttaaatctctgatcactttagttgaattca 698
Query: 342 tgatgctaaatctccagaagaataatcacagaatccatacatatgagctctcttagtaac 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgatgctaaatctccagaagaataatcacagaatccatacatatgagctctcttagtaac 638
Query: 402 cgtaacacatgctattgtccaggaatggttgttatttgtgttttcacggattcatacttc 461
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 637 cgtaacacacgctattgtccaggaatggttgttatttgtgttttgacggattcatacttc 578
Query: 462 ctctgtcactgaagag 477
||||||||||||||||
Sbjct: 577 ctctgtcactgaagag 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
