NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGCCTTAGATGAATAAGATAAGACTAGCTACATTGTTGAA
TTTGGGGTTTGGATATGACACCATTCTTCAATGAATACTGTAGAAGACCA
GTGGACAATAATTCCTTATATCAGCCTTTGACCTTCACGTGCATATACAT
ATATGAGAAACATGCAAACACACATACATGTACCACACATACACACACAA
AAATAGAAAAAGGAAAAAATAAGTAATAAAATAAATTTCATGAATCTTCT
TTCAGAAGTCATTAGGTTGTTATGTTAGGAAATAACTTTGATTCTTTGAA
AACCTTTTGAATTAAAGGCCATTCCGGAAGTCAAAGTCTTGAGTTAAAAA
GGAATAGGGTAATTGCCTCAGCTTGATGATGAGAAAGTGAAGGTTAATAG
GAAATTCTCCTCTTTGACACAAATCAGCATATTGCCTTAAAAAAAAAGAC
ACTGAAAAACCTGATCCTCTCCTCTCTAGAGACCTCTCTGTCTAGGATAG
TGCCAGGTACACGGCTGATATCAGCAAGGCTAGTTCTGCCTTCAGACCCA
TTAATGTACTAATTTGAGTGATTTCTGTTACTAGGGAAGAAAAGAAAAAG
CCCATCTTCCTAAGCTCCATATTCCACACCCTGTATTACTCAATAGGATT
CTAAAGACCGGTAAAATGTGGAGCAAAGCCCCTTTTCTTCTCTCTGGCGC
AATGGGTAAAAATTTTTTCCC

NNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATATTTGGGATATTAGCC
CTCTATGGTATGTAGGGTTGGTCCTGGGATCCCAATGTAAGAGTTAGGGG
AAGGGCTAAAGGAGCTGAAGGGGATTGTAATCCCACAGGAAGAACAAAAG
TATCAATTAACTGGACTCTTCAGAGCTCCCAGGCACTAAACCACCAACTA
AAGAGTATACAAGGGCCAGTCCATGGCTCCTACTACATATGTAGCAGAGG
ACTGCCTCATCTGGCATCAGTGTTTTTAGAGTCACTTGGTCCTGTGGAGG
TTAGATGCCCCAGAGAAGAGGGGTGAGGGGTGAGGGGTGAGGCAGGAATG
CGTCGGTGTTTTCTTCCCCCATACTCTTTCCTACCCTCTCCCCCTTTTCA
TCCTTCATATCCCTTATTTCTTTTTCCTCCTTCTTCCCCCTTCTCTTTTC
CTCTTTTTTTTCCTCTCCCCCTCTTTTCCTTTTCCTTTCCTCCTTTTTTT
TTTTTTTATATTTCCCCTTCACATTCATTTCTTTCCCTTTTTACTTTCCG
TTTTTCTCCTTTTTTTTTTCCCCTTTTTTCTTCCTCCTTTTTTTTCCCTT
TTTCCTTTCATTTCCCCCTTATCCCTTTCTATTTTCGCCTAATTTCCCCC
TTTTTCCCCTTCTTCCCCTTTTTTCCCTTTTTCTTTTTTTCCCCCTTCCC
CCTCCCTTTTTTTTTTTTTCCCCCTTTTTN

Query= MSMg01no353_f09.b1 MSMg01no353_f09.b1 CHROMAT_FILE:
MSMg01no353_f09.b1 PHD_FILE: MSMg01no353_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:11 2005
         (497 letters)



>mm_chr1_80638719_80639613
          Length = 895

 Score =  888 bits (459), Expect = 0.0
 Identities = 486/495 (98%), Gaps = 2/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattccagccttagatgaataagataagactagctacattgttgaatttggggtttg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 cggaattccagccttagatgaataagataagactagctacattgttgaatttggggtttg 834

                                                                       
Query: 63  gatatgacaccattcttcaatgaatactgtagaagaccagtggacaataattccttatat 122
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 833 gatatgacaccattcttcaatgaatactgtagaaggccagtggacaacaattccttatat 774

                                                                       
Query: 123 cagcctttgaccttcacgtgcatatacatatatgagaaacatgcaaacacacatacatgt 182
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 773 cagcctttgaccttcacgtgcatatacatatatgaaaaacatgcaaacacacatacatgt 714

                                                                       
Query: 183 accacacatacacacacaaaaatagaaaaaggaaaaaataagtaataaaataaatttcat 242
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 713 accacacatacacacacaaaaatagaaaaaggaaaaaataagtagtaaaataaatttcat 654

                                                                       
Query: 243 gaatcttctttcagaagtcattaggttgttatgttaggaaataactttgattctttgaaa 302
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 653 gaatcttctttcagaagtcatt-ggttgttatgttaggaaataactttgactctttgaaa 595

                                                                       
Query: 303 accttttgaattaaaggccattccggaagtcaaagtcttgagttaaaaaggaatagggta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 accttttgaattaaaggccattccggaagtcaaagtcttgagttaaaaaggaatagggta 535

                                                                       
Query: 363 attgcctcagcttgatgatgagaaagtgaaggttaataggaaattctcctctttgacaca 422
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 534 attgcctcagcttgatgatgagaaaatgaaggttaataggaaattctcctctttgacaca 475

                                                                       
Query: 423 aatcagcatattgccttaaaaaaaaagacactgaaaaacctgatcctctcctctctagag 482
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 474 aatcagcatattgcctt-aaaagaaagacactgaaaaacctgatcctctcctctctagag 416

                          
Query: 483 acctctctgtctagg 497
           |||||||||||||||
Sbjct: 415 acctctctgtctagg 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 895
Length adjustment: 10
Effective length of query: 487
Effective length of database: 885
Effective search space:   430995
Effective search space used:   430995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)