NNNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATGTTGTTACCAGCTCTCACTTTCTAATGTAAGATAT
TCCAGACTCATCATGGAATCTTCATGATTCTGTCACAGAGCCAGACATTT
TTCCAAAGAGCTCTGCTTCTTCTGAATGGTTAATGGTGTTGGAGAACTAA
ATGGATATTAGATGACTTCCTCGGTACATAAATATAGACACAGCCAGGAA
TAGTGGTGCACACCTTGAATCCCAGCACTGTGTAAAGGGATTACAGCATG
CAGATCTTTGTGAGTTTGAGGTCAACCTGGTTTGTGTATTGAGTTCTAGG
ACAGACAGAGCTAAATGGAGAGAACCTATGAAAAGCAAAAAAAACAACAA
AAGTTAAAGAAAGAAAATCTATAGGCATGCAAACATGCAAATATACGTGC
ATATCCTACAGGCACTCTAGACATGAAGACTACATGCCAGAATTTTCAGT
TTCACAGCATCTTCCACATTCATTCTTGTCTGTCTTCACTTCATGTTTGT
CTTTTCTTTTACATTAAGACATCTGGATTCCAACAATTAATTATTGACTT
AATCAATGATTCAATATATGCAAAATAATTCAGAGTAATACTGGCATGTT
TAGTCAATGTCTTTAGTCATTTATCTCTCTTTTAAACTGAACCCCTCTTT
TATCAAACCGGTGTTAATCTTTCCCATTTCTCTTTTGGGTGAAGTTATAA
CCCTTGGGTTTTATTTT

TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTGGGGTGGGTTTTTTTG
TTGTTTTGTTTTGCTTTTGTTTCCCCCCTCCCCCCCCTCTTTCCCCTTTC
CCCTTTTCCCCTCCTCCCTTTTCTTGGGCGCTTTCCCTTTTTTTCTTTTC
TTTTTCCCTTTCCTTCTTCCCTTTTCCCTCCTCCTCTTTTCTTTCTTCTT
CCTTCTTTTCTTCCCTTTCTTCCTTTCCCTTCTCCTCTCTTTCCTTCCCC
TTCCTTCTTCCCCCCCTTTTTTTTTTCTCNNCCNCCCCCCGTTCCCCTGT
CTCCTGNTCTTTTTTTTTCTTTCCCCTTCCTTCTCCTTCGCTCCCCTCTC
TTTCTCCCCCCCCTTTTTCCCCTTTCTTCCCCTCCCTCCTCTTCTTCCCC
TCTTTTCCTTCGCTTTTTCTTTCCCCCTTTTCCCCCTTTCCTTTTTTTCC
CCCCCTTTTTTTCTCTTTTTTCCTTTCCCTTCCCCTTTTTCCCTCTTCCT
TCTCTCCCTTCCTTNCCCTATCCCCTCTTCTTCTCTTCCCTTCTCCCCTC
TCCTCTCGCCCTTCCTCTCCCTCCCTTTTCCCTTTTTCCCTTTCCCGCCT
TTTTTCTTTTCGCCTTTCTCCTTTTTATCCTCTTCCCCCTTCTTTGTTTC
CCTCCTTCCGCTTCTCTCTTCTTTATTATACCCACCTTATCTATAACCTA
ACCCCTATAACTTACACCCTAACCAATTCTCCTAACAATAACACCTATAT
TTCACACCTAAAAATAACTTAACCATATTCACATTCCCCATTAACGCCAT
TAACACAATATTAATCAAATAACAATAAAAAAATTCCCTATAAAAACCCA
TACC

Query= MSMg01no353_k12.b1 MSMg01no353_k12.b1 CHROMAT_FILE:
MSMg01no353_k12.b1 PHD_FILE: MSMg01no353_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:35 2005
         (554 letters)



>mm_chr1_46385873_46386826
          Length = 954

 Score =  712 bits (368), Expect = 0.0
 Identities = 503/556 (90%), Gaps = 23/556 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatgttgttaccagctctcactttctaatgtaagatattccagactcatcatg 63
           ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattctatgttgttagcagctcttactttctaatgtaagataatccagactcatcatg 263

                                                                       
Query: 64  gaatcttcatgattctgtcacagagccagacatttttccaaagagctctgcttcttctga 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaatctttatgattctgtcacagagccagacatttttccaaagagctctgcttcttctga 323

                                                                       
Query: 124 atggttaatggtgttggagaactaaatggatattagatgacttcctcggtacataaatat 183
           ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct: 324 atggttaatggtgttggagaactcaatggatattagatgacttccttggtacttaaatat 383

                                                                       
Query: 184 agacacagccaggaatag-tggtgcacaccttgaatcccagcactgtgtaaagggattac 242
           ||| |||||||||||| | || | |||||||| ||||||||||||||||| |||     |
Sbjct: 384 agaaacagccaggaat-gatgatacacacctttaatcccagcactgtgtagagg-----c 437

                                                                       
Query: 243 agcatgcagatctttgtgagtttgaggtcaacctggtttgtgtattgagttctaggacag 302
           | |||  |||||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 438 a-cat--agatctttgtcagtttgaggtcagcctggtctgtgtattgagttctaggacag 494

                                                                       
Query: 303 acagagctaaatggagagaacctatg-aaaagcaaaaa-a--aacaacaaaagttaaaga 358
           |||| |||||||||||||| |||||| |||| ||| || |  |||||||||| |||| ||
Sbjct: 495 acagggctaaatggagagaccctatgtaaaaacaacaacagcaacaacaaaaattaagga 554

                                                                       
Query: 359 aagaaaatctataggcatgcaaacatgcaaatatacgtgcatatcctacaggcactctag 418
           |||||||||||||||||||||||||| |||||||||||  ||||      | | ||||||
Sbjct: 555 aagaaaatctataggcatgcaaacatacaaatatacgt--atat------gtc-ctctag 605

                                                                       
Query: 419 acatgaagactacatgccagaattttcagtttcacagcatcttccacattcattcttgtc 478
            |||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct: 606 gcatgaaaactacacgccagaattttcagttttacagcatcttccaaattcattcttttc 665

                                                                       
Query: 479 tgtcttcacttcatgtttgtcttttcttttacattaagacatctggattccaacaattaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgtcttcacttcatgtttgtcttttcttttacattaagacatctggattccaacaattaa 725

                           
Query: 539 ttattgacttaatcaa 554
            |||||||||||||||
Sbjct: 726 ctattgacttaatcaa 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)