BAC Information

Click to search

BAC

Clone NameMSMg01-353L03
Chromosome1 (Build37)
Map Location 116,243,308 - 116,243,685
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353L03.T7 (MSMg01no353_l03.b1)MSMg01-353L03.TJ (MSMg01no353_l03.g1)
ACCAG464511AG464512
length771773
length of high quality
(start - end)
457 (54 - 510)378 (83 - 460)
definitionCHROMAT_FILE: MSMg01no353_l03.b1 PHD_FILE: MSMg01no353_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:38 2005CHROMAT_FILE: MSMg01no353_l03.g1 PHD_FILE: MSMg01no353_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTACCTAATTTATTCTACGAAGCCACAGTTATGCTGAT
GCCTAAGCCACACAAAGACCCAATAGGAAAGATCACTTCAGACCAATTTC
ATTTATGAATATTGATGCAAAAATTATCAATAAAATTCTAGCAAACTGAA
TCCAAGAACACATCAAAATGATCATTCACCATAATGAAGTAGGCTTCATC
CCAGGAATGCAGGGTTAGTTCAATAGATGCAAATCCATCAATGTGATTCA
CTATATAAACAAACTCAAAGGAAAAAAAAAACACATTATTATCTCATTAG
ATGCTGAAAAAACTTTCCGCAAAATATAATAACCCTTCCTGATAAAAGTC
TTGAAACAATCAGGTACTCAAAGCACATACCTAACCTTAATAAAAGGGCT
ATACAGCAACCCCACAGCCAATATCAAATTAAAAGGAGAGAAATTTGAAG
CAATCTTAATAAAATAAGGAAAAGACAAGGCTAACTATTCTCTATTTATT
CAATATAATATTTGAAGTTCTATCTAGAGCACTTCGAAAACAAGAGAGGT
CCCAGTGATACTAATATGGAACGAAAGAAGTTAAACGGATACCATCTGGA
TAATGACGTGACCAGGGTACTTAACCGAACTCCCAAATTTCTACCTAAAA
AACTCTCTACGCCTGAAAAACAATCCTCCTTTATGGCGAATTTTTTTCAA
TACTCTTCCTATTCAATCTAN
CCTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTCAGGAGAAAGAA
AATGCAAAGTTAATTCTATGGCAGATTCTATTCAGATCAGGATCTCTGTG
TGAGACATGTACTCAGCCCATGACCTTGAGCAAAAAGCTTTCCTGAAGTA
TAATCCTTTTAGATACCATAAAATTTAAAGTGCAGACACTTGTCAGAGAG
TACCAAGTCTCAAGGGAATGTTTCTTTTAAATCTGTCTTGTTTTACTTAT
ACCTAAGTATCAAAGGAAAAATGTAGTATAACCTGTGGATTAATTTAGTT
ATATGCTTCAGATAAAACATAGCCTCCAGAAAGAACTGTGGCTGCTAAGA
CTTATCAAAATGTCAGTATAGTGTCAGTATAGTGACTGCACCTTTTCATC
CACTTTCAGCATGAGATCAAAAGAATTTTTTAGAGAGGTCAGGCATGAAA
TATTCACAGGTCTGCTCCATCCTCGAACTGCGAAACTAGGATTTCTCTAA
GAAAAGTCATTTTACCATGTGAAAGCAGCTACTTCTCCCGTTAGACCCCA
TTTTTTTTCGCGTTACTCGCCCCGATTTTTTGCCCTGTTGCTTTGCTTCC
GCCCCTTTCCCGTTCATATTTCCCTTTTTTCCGCCTTCTTCCCCTACTTC
GGGCTTTTTTCCGTTTATTCTATTATATCCCCTTCCCTCGTTCCCTTTTT
CTTTTTTTTTCGCCCCTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_l03.g1 MSMg01no353_l03.g1 CHROMAT_FILE:
MSMg01no353_l03.g1 PHD_FILE: MSMg01no353_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:38 2005
         (378 letters)



>mm_chr1_116243108_116243885
          Length = 778

 Score =  731 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagctcaggagaaagaaaatgcaaagttaattctatggcagattctattcagatcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagctcaggagaaagaaaatgcaaagttaattctatggcagattctattcagatcagga 260

                                                                       
Query: 61  tctctgtgtgagacatgtactcagcccatgaccttgagcaaaaagctttcctgaagtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgtgtgagacatgtactcagcccatgaccttgagcaaaaagctttcctgaagtata 320

                                                                       
Query: 121 atccttttagataccataaaatttaaagtgcagacacttgtcagagagtaccaagtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccttttagataccataaaatttaaagtgcagacacttgtcagagagtaccaagtctca 380

                                                                       
Query: 181 agggaatgtttcttttaaatctgtcttgttttacttatacctaagtatcaaaggaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggaatgtttcttttaaatctgtcttgttttacttatacctaagtatcaaaggaaaaat 440

                                                                       
Query: 241 gtagtataacctgtggattaatttagttatatgcttcagataaaacatagcctccagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagtataacctgtggattaatttagttatatgcttcagataaaacatagcctccagaaa 500

                                                                       
Query: 301 gaactgtggctgctaagacttatcaaaatgtcagtatagtgtcagtatagtgactgcacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaactgtggctgctaagacttatcaaaatgtcagtatagtgtcagtatagtgactgcacc 560

                             
Query: 361 ttttcatccactttcagc 378
           ||||||||||||||||||
Sbjct: 561 ttttcatccactttcagc 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)