Query= MSMg01no353_n08.b1 MSMg01no353_n08.b1 CHROMAT_FILE:
MSMg01no353_n08.b1 PHD_FILE: MSMg01no353_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:49 2005
(401 letters)
>mm_chr1_63709197_63709997
Length = 801
Score = 748 bits (387), Expect = 0.0
Identities = 396/399 (99%), Gaps = 1/399 (0%)
Strand = Plus / Plus
Query: 1 agcaaacttcaaacttgatttgaagaattctagtggactcagcagacctgtttcagccca 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agcaaacttcaaacttgatttgaagatttctagtggactcagcagacctgtttcagccca 260
Query: 61 tgagaaacgtgtttcacatctaaactggtgaagatcaggaaatacaagaagagaaaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagaaacgtgtttcacatctaaactggtgaagatcaggaaatacaagaagagaaaggga 320
Query: 121 ccaaatgggccaatgagaagccctggggctctgacctccttcccttccgggccccttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaatgggccaatgagaagccctggggctctgacctccttcccttccgggccccttgtg 380
Query: 181 acttgttagctagtctggggggttttaccccttgcatagttgcatacccctgaccataaa 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgttagctagtctggggggtttcaccccttgcatagttgcatacccctgaccataaa 440
Query: 241 tcataactcaggctcgtctttggcctaggattctcatttctttctttccttctcttcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcataactcaggctcgtctttggcctaggattctcatttctttctttccttctcttcaaa 500
Query: 301 acctatatcctaacctctctccctctctccctctctctctccctttcatttctttctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctatatcctaacctctctccctctctccctctctctctccctttcatttctttctttt 560
Query: 361 ttttttt-ccccatttttccagacactgtttctctgtgt 398
||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 ttttttttccccatttttccagacactgtttctctgtgt 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_n08.g1 MSMg01no353_n08.g1 CHROMAT_FILE:
MSMg01no353_n08.g1 PHD_FILE: MSMg01no353_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:49 2005
(371 letters)
>mm_chr1_63870341_63871111
Length = 771
Score = 656 bits (339), Expect = 0.0
Identities = 363/371 (97%)
Strand = Plus / Minus
Query: 1 tgcattcaagttctcttcactcctacttattggactgatcagacctctgagtcaatgttt 60
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 571 tgcattcaaattatcttcactcctacttattggactgatcagacctctgagtcagtgttt 512
Query: 61 atcagttcagtaaatagaaagcttgaggttgcaatgaagctcaaaggagacagcagagaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atcaattcagtaaatagaaagcttgaggttgcaatgaagctcaaaggagacagcagagaa 452
Query: 121 attatttttattacaaatcacagactcggatcttggtgttttgtaatgaattaggttaca 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 451 attatttttattacaaatcacagactctgatcttggtgttttgtaatgaattaggttaca 392
Query: 181 ataagtaaaatgtaagcagtattttcaggggaactgtcatttttgttgtcttcccaaagg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ataagtaaaatgtaagtagtattttcaggggaactgtcatttttgttgtcttcccaaagg 332
Query: 241 ttttcttgtcctttcctactgtgcattagccagagagcagcagaatttctaatgaggtag 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttttcttgtcctttcctagtgtgcattagccagagagcagcagaatttctaatgaggtag 272
Query: 301 acttaggaagactcatccatgatcctgaaatgcctaaagataattctagaacttcaagac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acttaggaagactcatccatgatcctgaaatgcctaaagataattctagaacttcaagat 212
Query: 361 tgactttctgt 371
|||||||||||
Sbjct: 211 tgactttctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
