BAC Information

Click to search

BAC

Clone NameMSMg01-353P08
Chromosome1 (Build37)
Map Location 154,953,707 - 154,953,815
singlet/doubletsinglet
Overlap geneNmnat2
Upstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097
Downstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353P08.T7 (MSMg01no353_p08.b1)MSMg01-353P08.TJ (MSMg01no353_p08.g1)
ACCAG464707AG464708
length776776
length of high quality
(start - end)
138 (76 - 213)108 (77 - 184)
definitionCHROMAT_FILE: MSMg01no353_p08.b1 PHD_FILE: MSMg01no353_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:58 2005CHROMAT_FILE: MSMg01no353_p08.g1 PHD_FILE: MSMg01no353_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCC
GCGGAATTCTTGATGTACCCCAGGTTAGCCTCAAACTTGTAGAGATTCAT
TTGCTTCTGCAAGTGATTCCTCCCAAGTGCTGGAATCAAATATGTGCACC
ACCATGCCTGACTCGCTCATGTACTTTTGATTTTTTTTACAGGTAATTTT
TCTTTTTGTTTTGTTTCATAACTAATAAAACCCATTTGACTTTACCTCTG
CTGATTTGGACTTTGTACATCTTTTTCAATCGAACTTTTGTCATTGTGAT
ACAACTCACAGCACTTCTGCGTAGTTCTGTTTTCTCCTTCATCAAGTGGG
TCACAACGATCAAACTCATGTGGCCAGAGTATAACATCCTTACTCAGCCT
ATCTTCTCACTGGCCCTGACCACTACCTTTTGCCTATAGACTCAACAGCT
ACCACTACATTTCTGACCATCCTACTCAACTTCCCTCTTTTCCCCATAGC
TCACAAATATATATTATCTATCCTCATACCCCCCAAAAGATATCATCTAC
CCCCCTTGTCCGTCTCCTATAACCATCCCTCTTCCCCCATACTCCCCTGT
ACCTCCGTCCTTCCCCATAAATCTTCCACCCCCATATAACCCTTCCCCCT
CCCAATTCCCCCCTCTCCCATTTCTTATATTTCCTCCCCCTTCCTCTTTT
ATCGCTCATTTCCCCCACTCCCGCGTATTCTCCCTCCCTTATAACCCCCT
CCTCCCCCCCCTCCTCTTTTCCCCCG
CCCGATGACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGAAACATTCTGGTTAGTCT
GGGTGTCCATAACAGCAGAAACAAGTGTCCTAAGTGAGAGGTAGAGAGGA
ATTGGCTGTAAGAGAGAAGTAAAGAATGGTCTGGGGGAGGAGGAGGCCAG
GAGCTAGCAACACAGCCCCTTGTCTAGAAGAGCTGGTTATCTGACTGCCC
TACTCCCTCCGGTAGCATAACTAGTCACTGTCTATAACTGCGTCCATAGC
TGTATCATACTGGCCCCTGTCTATACCCTCGATCTTTGCTTGCCCGCGCG
TATTCCTTACCCCTGTACCCTCTCACCCGCATGTCCTGTCCTCGATGCTA
CATTCTTGCCTTCTTCCTTCCGTCCTTTCTTCTCTCATCTTCATCCCTTC
CTCGCCATTCTTTCCTTTTCGTCCTTCTTCCCTTTTCACTCTCATCCGCC
CTATTCTTCTTCTTTGTTTCCCGCCCCGCTTCTTCCTTTTCCCCCTTTTT
TTCCTCCTTTTCTCCCTTTTGCCCCCCATCCCTTTTTTTTCTTCTCTTAT
CTTCCCCTTTCTTCCCATTTCCCCTTTCCCCCTTCTCTCCTTTTATTTTC
CCCCTTCCCTTCCCATTTCCTCCCCTTTTTTCCCTTTTTCACCCTTTCCC
TTCCCCTTTTCCCTTTTTTTCCCTTTCTTTTCCCCTTTTTTCCCCCTTTT
CCTTCCCTTTCTTCCTCCTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_p08.g1 MSMg01no353_p08.g1 CHROMAT_FILE:
MSMg01no353_p08.g1 PHD_FILE: MSMg01no353_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:59 2005
         (108 letters)



>mm_chr1_154953507_154954015
          Length = 509

 Score =  203 bits (105), Expect = 2e-57
 Identities = 108/109 (99%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttg-aaacattctggttagtctgggtgtccataacagcagaaacaagtgtcctaagt 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcttgaaaacattctggttagtctgggtgtccataacagcagaaacaagtgtcctaagt 250

                                                            
Query: 60  gagaggtagagaggaattggctgtaagagagaagtaaagaatggtctgg 108
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagaggtagagaggaattggctgtaagagagaagtaaagaatggtctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 509
Length adjustment: 8
Effective length of query: 100
Effective length of database: 501
Effective search space:    50100
Effective search space used:    50100
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)