Query= MSMg01no354_e10.b1 MSMg01no354_e10.b1 CHROMAT_FILE:
MSMg01no354_e10.b1 PHD_FILE: MSMg01no354_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:23 2005
(622 letters)
>mm_chr1_50954579_50955603
Length = 1025
Score = 1141 bits (590), Expect = 0.0
Identities = 612/621 (98%), Gaps = 3/621 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgttgttgccttttgtttctagagacaaacaataagtgaatggaacaatttca 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgttgttggcttttgtttctagagacaaacaataagtgaatggaacaatttca 264
Query: 65 gttctcactaaactgaatctgagatgccatctgctctgatttcatacttaaagaagagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctcactaaactgaatctgagatgccatctgctctgatttcatacttaaagaagagaa 324
Query: 125 aagaagtcaacatttaaaacaaaaaaa---caacctttattctaatgttgttaaaacact 181
|||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||
Sbjct: 325 aagaagtcaacattaaaaaaaaaaaaaaaccaacctctattctaatgttgttaaaacact 384
Query: 182 cagtgggaaatcaagataacatttgagaattgtaactgactctgtgattcagatcatggc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtgggaaatcaagataacatttgagaattgtaactgactctgtgattcagatcatggc 444
Query: 242 accactatggcatctgagcaccccagcacttacaaagatgtctacaaatggagcagtgac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accactatggcatctgagcaccccagcacttacaaagatgtctacaaatggagcagtgac 504
Query: 302 ttaggtttatgggggatctcacacttttctccctggcacagtgggagaaatgctttatgc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaggtttatgggggatctcacacttttctccctggcacagtgggagaaatgctttatgc 564
Query: 362 catttaagggctatagctaagaactctgaatatctagattcttttttaaaggaagtgctt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catttaagggctatagctaagaactctgaatatctagattcttttttaaaggaagtgctt 624
Query: 422 ttgactataatgtacaggcagcaaatacattttcttccgttttcaattccaagtgacatt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgactataatgtacaggcagcaaatacattttcttccgttttcaattccaagtgacatt 684
Query: 482 taagaggataaatttactgcttttcccttgttgtctttacaggagagaaatctgatataa 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaggggataaatttactgcttttcccttgttgtctttacaggagagaaatctgatataa 744
Query: 542 acacaaaatgttgttacctaatgaaattcttactacagagcaactaattggcttanaata 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 acacaaaatgttgttacctaatgaaattcttactacagagcaactaattggcttaaaata 804
Query: 602 ctttaattatatgcctgatta 622
|||||||||||||||||||||
Sbjct: 805 ctttaattatatgcctgatta 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1025
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1015
Effective search space: 621180
Effective search space used: 621180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_e10.g1 MSMg01no354_e10.g1 CHROMAT_FILE:
MSMg01no354_e10.g1 PHD_FILE: MSMg01no354_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:23 2005
(482 letters)
>mm_chr1_51113291_51114172
Length = 882
Score = 855 bits (442), Expect = 0.0
Identities = 472/482 (97%)
Strand = Plus / Minus
Query: 1 ttaatgcatatctgtatttttagatcagataaaatgagtaagaagttctttccctgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttaatgcatatctgtatttttagatcagataaaatgagtaagaagttctttccctgaaaa 623
Query: 61 atatagagtgtgactcaaagaaaatgataatgaaatgaaatacttaaggccttgtgaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atatagagtgtgactcaaagaaaatgataatgaaatgaaatacttaaggccttgtgaagt 563
Query: 121 attaataagcagcaactaaatttgtctgtatgcttgaatctctaattttgtgtctctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attaataagcagcaactaaatttgtctgtatgcttgaatctctaattttgtgtctctgaa 503
Query: 181 gtggtggtctgatgaggctgggcccacgcacgcaggcagcgatttttggatggaagagta 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 502 gtggtggtctgatgaggctgggcccacgcatgcaggcagcgatttttggatggaagagta 443
Query: 241 aagggtttaaaagaactgactgcatgaggtagtgcctggtgactagtcgtgtttttcttg 300
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 aagggggcaaaagaactgactgcatgaggtagtacctggtgactagtcgtgtttttcttg 383
Query: 301 aattgtacccatttttgaggataacaacctccattcaagagattccttccaccaacaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aattgtacccatttttgaggataacaacctccattcaagagattccttccaccaacaaag 323
Query: 361 tcaaatgctcaaatgaagtgctttctgtcctggtttttaaattctatgtcagaagcttgg 420
||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 tcaaatgatcaaatgaggtgttttctgtcctggtttttaaattccatgtcagaagcttgg 263
Query: 421 gttatattttctgacaagcatcccactcctccactgctcccacactggatgcccagcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 gttatattttctgacaagcatcccactcctccactgctcccacactggatggccagcagt 203
Query: 481 tc 482
||
Sbjct: 202 tc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
