Query= MSMg01no354_f06.b1 MSMg01no354_f06.b1 CHROMAT_FILE:
MSMg01no354_f06.b1 PHD_FILE: MSMg01no354_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
(554 letters)
>mm_chr1_53520750_53521703
Length = 954
Score = 915 bits (473), Expect = 0.0
Identities = 533/557 (95%), Gaps = 7/557 (1%)
Strand = Plus / Plus
Query: 5 gaattcacagacatgatagctagcaatggtacaggtaagcctgactgttaatgatagcca 64
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 198 gaattcacagagatgatatctagcaatggtacaggcaagcctgactgttaatgatagcca 257
Query: 65 gcaagggtacagacaagcctgactgttaattatagccagcaatggtacaggcaagcctga 124
|||| | | ||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 258 gcaatgatgcaggcaagcctgactgttaatgatagccagcaatgatacaggcaagcctga 317
Query: 125 ctgttaatgatagccagcaatgatgcaggcaagcctgatttttggatga-------ataa 177
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 318 ctgttaatgatagccagcaatgatacaggcaagcctgattgttggatgaaaaactcataa 377
Query: 178 gagcttatgacagtcaaaatcaaatacttataacagtttatgtattcccaattccaactg 237
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagcttatgacagtcaaaatcaagtacttataacagtttatgtattcccaattccaactg 437
Query: 238 gtccaatttctgatgatcctttaacagtgaaatcaattagaatgaggttggaagcaaccc 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 438 gtccaatttctgatgatcctttaacagtgaaatcaattagaatgaggttagaagcaagcc 497
Query: 298 ttactacaaactggactgaatctctttttaaggttcattagagatgttatatgaaacaat 357
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 498 ttactacaaactggactgaatctctttttaaggttcattagaggtgttatatgaaacaat 557
Query: 358 cttaagagagagacaagagagagcactgctctcatatactatgaatgaagtatttttgtg 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttaagagagatacaagagagagcactgctctcatatactatgaatgaagtatttttgtg 617
Query: 418 ttaatgagccactatcctgcaagaagaaacattaggaaatttacctgtttatagtgccca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttaatgagccactatcctgcaagaagaaacattaggaaatttacctgtttatagtgccca 677
Query: 478 tcaagggctatctactgatatccactctatccaagtacttaattagtggagaggctggtg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaagggctatctactgatatccactctatccaagtacttaattagtggagaggctggtg 737
Query: 538 tagttgtgcatgcccac 554
|||||||||||||||||
Sbjct: 738 tagttgtgcatgcccac 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_f06.g1 MSMg01no354_f06.g1 CHROMAT_FILE:
MSMg01no354_f06.g1 PHD_FILE: MSMg01no354_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
(377 letters)
>mm_chr1_46582492_46583268
Length = 777
Score = 613 bits (317), Expect = e-180
Identities = 356/369 (96%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 1 tctgctatacttaatcagtgttttccccatgcaagtgaggtagtttggtgacaaagtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctatacttaatcagtgttttccccatgcaagtgaggtagtttggtgacaaagtttg 260
Query: 61 accaggtacagtctttcttccttcagttgatttggccagttgactacagaccagaaagtc 120
|||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 261 accaggcacagtctttcttccttcagttgatttggccagttgactagagcccagaaggtc 320
Query: 121 ccagtgggatccaggttcaatttaaaaccattcttctgggattagggagatggctcagtt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ccagtgggatccaggttcaatttaaaactattcttctgggattagggagatggctcagtt 380
Query: 181 tttaaaaggacccaaggtgttgaaggagtttgcagccccataggaggaaccacaatatga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tttaaaaggacccaaggtgttgaaggagtttgcagccccgtaggaggaaccacaatatga 440
Query: 241 actaaccagtaaccccagagctcccagagactaaatcaacaaccaaagagaacatgtggc 300
|||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||
Sbjct: 441 actaaccagtaaccccagagatcccagggactaaaccaccaaccaaagagaacatgtggc 500
Query: 301 aggactcatggctccagctgcatatgtagcagaggatggcctagttggtcatcaatggag 360
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct: 501 aggactcatggctccagctgcatatgtagcggaggatggcctagtcggtcatcaatgg-g 559
Query: 361 ggggggggg 369
|||||||||
Sbjct: 560 ggggggggg 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|