BAC Information

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BAC

Clone NameMSMg01-354F06
Chromosome1 (Build37)1 (Build37)
Map Location 53,520,947 - 53,521,50346,582,692 - 46,583,059
singlet/doubletsingletsinglet
Overlap geneLOC100042162
Upstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354F06.T7 (MSMg01no354_f06.b1)MSMg01-354F06.TJ (MSMg01no354_f06.g1)
ACCAG464986AG464987
length753754
length of high quality
(start - end)
554 (51 - 604)377 (82 - 458)
definitionCHROMAT_FILE: MSMg01no354_f06.b1 PHD_FILE: MSMg01no354_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:27 2005CHROMAT_FILE: MSMg01no354_f06.g1 PHD_FILE: MSMg01no354_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:27 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(53,520,947 - 53,521,503)(46,582,692 - 46,583,059)
sequence
NNNCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACAGACATGATAGCTAGCAATGGTACAGGTAAGCCTGACT
GTTAATGATAGCCAGCAAGGGTACAGACAAGCCTGACTGTTAATTATAGC
CAGCAATGGTACAGGCAAGCCTGACTGTTAATGATAGCCAGCAATGATGC
AGGCAAGCCTGATTTTTGGATGAATAAGAGCTTATGACAGTCAAAATCAA
ATACTTATAACAGTTTATGTATTCCCAATTCCAACTGGTCCAATTTCTGA
TGATCCTTTAACAGTGAAATCAATTAGAATGAGGTTGGAAGCAACCCTTA
CTACAAACTGGACTGAATCTCTTTTTAAGGTTCATTAGAGATGTTATATG
AAACAATCTTAAGAGAGAGACAAGAGAGAGCACTGCTCTCATATACTATG
AATGAAGTATTTTTGTGTTAATGAGCCACTATCCTGCAAGAAGAAACATT
AGGAAATTTACCTGTTTATAGTGCCCATCAAGGGCTATCTACTGATATCC
ACTCTATCCAAGTACTTAATTAGTGGAGAGGCTGGTGTAGTTGTGCATGC
CCACACATAGGACACATCTTTAAAATCATCCCTTTCTGGTACTTCCCAAT
AAATGTGTTAATTTAATGTTCTCTGGAAAACTATTCATAGTCCCCGCAGC
TCTAAAATGATCTCTACTTTGCCCAATTACACTTGTTGAAAATACTATCT
GGT
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTATACTTAATCAGT
GTTTTCCCCATGCAAGTGAGGTAGTTTGGTGACAAAGTTTGACCAGGTAC
AGTCTTTCTTCCTTCAGTTGATTTGGCCAGTTGACTACAGACCAGAAAGT
CCCAGTGGGATCCAGGTTCAATTTAAAACCATTCTTCTGGGATTAGGGAG
ATGGCTCAGTTTTTAAAAGGACCCAAGGTGTTGAAGGAGTTTGCAGCCCC
ATAGGAGGAACCACAATATGAACTAACCAGTAACCCCAGAGCTCCCAGAG
ACTAAATCAACAACCAAAGAGAACATGTGGCAGGACTCATGGCTCCAGCT
GCATATGTAGCAGAGGATGGCCTAGTTGGTCATCAATGGAGGGGGGGGGG
GGAGAGNNNNTNGNNTTTGNGNNNGNNNTTTGTTTTTTTGTTGTGTTTTT
TTNGTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTGGTTGTTTTTTTTGTTGTGTTTTTTTTTTTTTTTCTTTTTG
TTTTTGTTGTTGTGTGTTGTTGTTTTTTTGTGTTTTTGTTGTTTTGTTGT
TTTTTTGTGTGTTTGTTTGGTTTTTTTTTTTTTTTTTTGGTTTTTTGTTT
TTTTTTTTTGTGTTGTTGTTTTTTTTTTTCCGTGTGTTTTTTCTTCTTTT
TCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_f06.b1 MSMg01no354_f06.b1 CHROMAT_FILE:
MSMg01no354_f06.b1 PHD_FILE: MSMg01no354_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
         (554 letters)



>mm_chr1_53520750_53521703
          Length = 954

 Score =  915 bits (473), Expect = 0.0
 Identities = 533/557 (95%), Gaps = 7/557 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagacatgatagctagcaatggtacaggtaagcctgactgttaatgatagcca 64
           ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 198 gaattcacagagatgatatctagcaatggtacaggcaagcctgactgttaatgatagcca 257

                                                                       
Query: 65  gcaagggtacagacaagcctgactgttaattatagccagcaatggtacaggcaagcctga 124
           |||| | | ||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 258 gcaatgatgcaggcaagcctgactgttaatgatagccagcaatgatacaggcaagcctga 317

                                                                       
Query: 125 ctgttaatgatagccagcaatgatgcaggcaagcctgatttttggatga-------ataa 177
           |||||||||||||||||||||||| ||||||||||||||| ||||||||       ||||
Sbjct: 318 ctgttaatgatagccagcaatgatacaggcaagcctgattgttggatgaaaaactcataa 377

                                                                       
Query: 178 gagcttatgacagtcaaaatcaaatacttataacagtttatgtattcccaattccaactg 237
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagcttatgacagtcaaaatcaagtacttataacagtttatgtattcccaattccaactg 437

                                                                       
Query: 238 gtccaatttctgatgatcctttaacagtgaaatcaattagaatgaggttggaagcaaccc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 438 gtccaatttctgatgatcctttaacagtgaaatcaattagaatgaggttagaagcaagcc 497

                                                                       
Query: 298 ttactacaaactggactgaatctctttttaaggttcattagagatgttatatgaaacaat 357
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 498 ttactacaaactggactgaatctctttttaaggttcattagaggtgttatatgaaacaat 557

                                                                       
Query: 358 cttaagagagagacaagagagagcactgctctcatatactatgaatgaagtatttttgtg 417
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttaagagagatacaagagagagcactgctctcatatactatgaatgaagtatttttgtg 617

                                                                       
Query: 418 ttaatgagccactatcctgcaagaagaaacattaggaaatttacctgtttatagtgccca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttaatgagccactatcctgcaagaagaaacattaggaaatttacctgtttatagtgccca 677

                                                                       
Query: 478 tcaagggctatctactgatatccactctatccaagtacttaattagtggagaggctggtg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaagggctatctactgatatccactctatccaagtacttaattagtggagaggctggtg 737

                            
Query: 538 tagttgtgcatgcccac 554
           |||||||||||||||||
Sbjct: 738 tagttgtgcatgcccac 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no354_f06.g1 MSMg01no354_f06.g1 CHROMAT_FILE:
MSMg01no354_f06.g1 PHD_FILE: MSMg01no354_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
         (377 letters)



>mm_chr1_46582492_46583268
          Length = 777

 Score =  613 bits (317), Expect = e-180
 Identities = 356/369 (96%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctatacttaatcagtgttttccccatgcaagtgaggtagtttggtgacaaagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctatacttaatcagtgttttccccatgcaagtgaggtagtttggtgacaaagtttg 260

                                                                       
Query: 61  accaggtacagtctttcttccttcagttgatttggccagttgactacagaccagaaagtc 120
           |||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 261 accaggcacagtctttcttccttcagttgatttggccagttgactagagcccagaaggtc 320

                                                                       
Query: 121 ccagtgggatccaggttcaatttaaaaccattcttctgggattagggagatggctcagtt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ccagtgggatccaggttcaatttaaaactattcttctgggattagggagatggctcagtt 380

                                                                       
Query: 181 tttaaaaggacccaaggtgttgaaggagtttgcagccccataggaggaaccacaatatga 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tttaaaaggacccaaggtgttgaaggagtttgcagccccgtaggaggaaccacaatatga 440

                                                                       
Query: 241 actaaccagtaaccccagagctcccagagactaaatcaacaaccaaagagaacatgtggc 300
           |||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||
Sbjct: 441 actaaccagtaaccccagagatcccagggactaaaccaccaaccaaagagaacatgtggc 500

                                                                       
Query: 301 aggactcatggctccagctgcatatgtagcagaggatggcctagttggtcatcaatggag 360
           |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct: 501 aggactcatggctccagctgcatatgtagcggaggatggcctagtcggtcatcaatgg-g 559

                    
Query: 361 ggggggggg 369
           |||||||||
Sbjct: 560 ggggggggg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)