BAC Information

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BAC

Clone NameMSMg01-354J18
Chromosome1 (Build37)
Map Location 84,676,418 - 84,865,386
singlet/doubletdoublet
Overlap geneDner, Trip12, Fbxo36
Upstream gene5033414K04Rik, LOC100039638
Downstream geneSlc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354J18.T7 (MSMg01no354_j18.b1)MSMg01-354J18.TJ (MSMg01no354_j18.g1)
ACCAG465196AG465197
length758764
length of high quality
(start - end)		514 (47 - 560)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no354_j18.b1 PHD_FILE: MSMg01no354_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:48 2005CHROMAT_FILE: MSMg01no354_j18.g1 PHD_FILE: MSMg01no354_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,864,928 - 84,865,386)(84,676,418 - 84,676,892)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTCTTCTGAGACCAGTAGATAAAAATTTCCTCCAGTTGCCTA
CTGCCCAATGTGGTTTTTTTTTTTCTGTCAGGTGTTTCAGTGTAACCTGA
AAGTTGTCTTAAATTCTTCATATCCCCCACAGTATTTGACTTTCTGCACC
TGGCTCCACACATTCTTCTTGGACATTTACTTACTGGTTAGGTCAATAAT
GATCTCTTCAGTAATTTAATGAAAAAGCAGTATTTCACTGACCAGGTCTG
ATGGTCTCCATGAGGGAGGCTGAGTCAGTCAGATCCTAAATTCAAGGCCA
GCCTGAGTAATTTAAATATGTAAAACACTCAAACAGGGGCTGGGGAGATG
GCTCAGTGGTTAAGAGCACTGTCTGCTTTTCCAGAGGTCCTGCATTCAAT
TCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTTATGC
CCTCTTCTGGTGTATCTGAAGACAGCAACAGTGTACTCATATAAATAAAG
TAAATAACTCTTAAAAAAAAAAACCAAAAAAAAAAAAACCAAAAAAAAAA
AAACAAACCCATACTCACACTGGACTACCGATTATTTCATTGTAATAATA
CTCTTCCAGTACTTGTAATTAGCCCTGGTTTGAATCTTACGTATCCCAAA
AATAATAAAACTGAACCATTTATGTACACATGTAATGAACCCATTTATTT
TTTTCTCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTGCACAACGAGAAGCCAAG
AACAAACACTTAAAATGGCCAATTTTAAAACGTGAAAATAAACAGAGAAA
TCCAGAAGCCTGACAGTCAGGACTAGTGAAGTTGTTCTTGAGAAGAAAAG
AGCTAAGGATCCTTGTGAGGAGTAAAACCCAGGACTGTTGCATCCTACTG
AACAGTAGGCCGACCTCTCCCTGTCCATGAGGGATGGAGAAGAACCTTCT
AGAACAAGAACATTACACCTGTGATCAGGCACATCAAAGAAAAGCTCTCT
TCACCAATGATAACAATAAAATTAACTTGGAAACGTTAACAAAATCCGAA
AGTGCCAGGTCATTTGGGGGGGATTGGAGTTCATCCCCGAGATTTATATT
TTGGGGCAGAGGAGCTAAGTAGTTCTTTTTTAAAAGAATTAAGAAAGGAA
ATATCTGCCGGGCAGTGATGATACATGCCTTTAATCCCAGCACTTGGGAG
GTNNANNNNNNCNNTTTTTCCCATTTTCTCCCTATTTCTCCCTCCTTCTA
TTATTTTCTTACTTTCTTTATTTTTTTATTTTTCTTTTCTCATCTACTCC
TCTTTCATTATTCTCCTCTATCCTCCCTCTCTCCATTTTTCCTCCTCTCC
ATCTTCTACACTTCCCCTCCTTTTTTATTATTCTTCTCTCTTCTTTTTCC
TCTCCTTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_j18.b1 MSMg01no354_j18.b1 CHROMAT_FILE:
MSMg01no354_j18.b1 PHD_FILE: MSMg01no354_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:48 2005
         (514 letters)



>mm_chr1_84864920_84865833
          Length = 914

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctcttctgagaccagtagataaaaatttcctccagttgcctactgcccaatg 64
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 467 gaattcctctctcctgagaccagtagataaaaatttcttccagttgcctactgcccaatg 408

                                                                       
Query: 65  tggtttttttttttctgtcaggtgtttcagtgtaacctgaaagttgtcttaaattcttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tggtttttttttttctgtcaggtgtttcagtgtaacctgaaagttgtcttaaattcttca 348

                                                                       
Query: 125 tatcccccacagtatttgactttctgcacctggctccacacattcttcttggacatttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tatcccccacagtatttgactttctgcacctggctccacacattcttcttggacatttac 288

                                                                       
Query: 185 ttactggttaggtcaataatgatctcttcagtaatttaatgaaaaagcagtatttcactg 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 287 ttactggttaggtcaataatgatctcttcagtaatttaatgcaaaagcagtatttcactg 228

                                                                       
Query: 245 accaggtctgatggtctccatgagggaggctgagtcagtcagatcctaaattcaaggcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 accaggtctgatggtctccatgagggaggctgagtcagtcagatcctaaattcaaggcca 168

                                                                       
Query: 305 gcctgagtaatttaaatatgtaaaacactcaaacaggggctggggagatggctcagtggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gcctgagtaatttaaatatgtaaaacactcaaacaggggctggggagatggctcagtggt 108

                                                                       
Query: 365 taagagcactgtctgcttttccagaggtcctgcattcaattcccagcaaccacatggtgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 taagagcactgtctgcttttccagaggtcctgcattcaattcccagcaaccacatggtgg 48

                                                  
Query: 425 ctcacaaccatctgtaatgggatcttatgccctcttctg 463
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ctcacaaccatctgtaatgggatcttatgccctcttctg 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_j18.g1 MSMg01no354_j18.g1 CHROMAT_FILE:
MSMg01no354_j18.g1 PHD_FILE: MSMg01no354_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:48 2005
         (478 letters)



>mm_chr1_84676218_84677095
          Length = 878

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttgcacaacgagaagccaagaacaaacacttaaaatggccaattttaaaacgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttgcacaacgagaagccaagaacaaacacttaaaatggccaattttaaaacgtgaa 260

                                                                       
Query: 61  aataaacagagaaatccagaagcctgacagtcaggactagtgaagttgttcttgagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaacagagaaatccagaagcctgacagtcaggactagtgaagttgttcttgagaaga 320

                                                                       
Query: 121 aaagagctaaggatccttgtgaggagtaaaacccaggactgttgcatcctactgaacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagctaaggatccttgtgaggagtaaaacccaggactgttgcatcctactgaacagt 380

                                                                       
Query: 181 aggccgacctctccctgtccatgagggatggagaagaaccttctagaacaagaacattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccgacctctccctgtccatgagggatggagaagaaccttctagaacaagaacattac 440

                                                                       
Query: 241 acctgtgatcaggcacatcaaagaaaagctctcttcaccaatgataacaataaaattaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgtgatcaggcacatcaaagaaaagctctcttcaccaatgataacaataaaattaac 500

                                                                       
Query: 301 ttggaaacgttaacaaaatccgaaagtgccaggtcatttgggggggattggagttcatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggaaacgttaacaaaatccgaaagtgccaggtcatttgggggggattggagttcatcc 560

                                                                       
Query: 361 ccgagatttatattttggggcagaggagctaagtagttcttttttaaaagaattaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgagatttatattttggggcagaggagctaagtagttcttttttaaaagaattaagaaa 620

                                                                  
Query: 421 ggaaatatctgccgggcagtgatgatacatgcctttaatcccagcacttgggagg 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaatatctgccgggcagtgatgatacatgcctttaatcccagcacttgggagg 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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