BAC Information

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BAC

Clone NameMSMg01-354M04
Chromosome1 (Build37)
Map Location 69,901,573 - 69,901,920
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354M04.T7 (MSMg01no354_m04.b1)MSMg01-354M04.TJ (MSMg01no354_m04.g1)
ACCAG465310AG465311
length747750
length of high quality
(start - end)
355 (50 - 404)458 (80 - 537)
definitionCHROMAT_FILE: MSMg01no354_m04.b1 PHD_FILE: MSMg01no354_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:00 2005CHROMAT_FILE: MSMg01no354_m04.g1 PHD_FILE: MSMg01no354_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAACAATTCTATATTTTTTGTGTTTTGTTTTTCTACAATTA
AAACACATTCAGCCAATACTGACCGAATCATGAGTATTTGGGAGGCTAAC
ACAAAAGAGCTATGCACAGAAGGTCAGCATAAGCTACAGAGCAAGCAAGA
ACTCAGTTCTCCTCATAAAATGCAGTATATTATATATGCAAAGTAACAAA
GCTTGAGAAGAAATCTGGACGATATGAGGGAGTTGGGAGAAGTGCCCATA
CAGTACAAATGTTTGCAAAAACGCTATTTACAAAAATTTAAAATAAAAAA
AACCAAAACTATTTCTACATATATATTCTCAGTATACAAAGAAAATGAAA
GGTACNCTTGTATTACTGANACCTTTTTTNAAATTACAATTGAGCCACAA
AACTCTGTAAGCAATTTTATATAAATTCCACTTGCTATAATATGCAATAT
CTGGNAAAAATAACACTTGTTTCTTATCTATCATTCACTATCTTTTAAAT
AATGCTAGGAACCCTTCGATCTTTACATGATAATATCTGTACCAAGAGAG
CAGGCCTGCTGAGTTTCATAATCAATCAGACCCTACTCGCTTTACCTTTG
TACTCGNCATTATTTTGCGGCATCACTCGAAAATCCCGTTCATTTTGCTC
TAATCCAATACTACCGCCTTGATAACAATCCCTCTGCCTCCCTNCAN
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGATGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGAAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAATAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACTAAGGAACTCACACAATATGTACTCACTGA
TAAGGGGATATTACCCCATATCCTAGGATAACCAAGATATAATATACTAT
TTCCTAAAATACATGAATCTCATGAAAAATGAACACTGAAGTGTGGACCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_m04.b1 MSMg01no354_m04.b1 CHROMAT_FILE:
MSMg01no354_m04.b1 PHD_FILE: MSMg01no354_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:00 2005
         (355 letters)



>mm_chr1_69901438_69902193
          Length = 756

 Score =  636 bits (329), Expect = 0.0
 Identities = 345/353 (97%), Gaps = 7/353 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-caacaattctatattttttgtgttttgtttttctacaattaaaacacattcag 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattcacaacaattctatattttttgtgttttgtttttctacaattaaaacacattcag 424

                                                                       
Query: 64  ccaatactgaccgaatcatgagtatttgggaggctaacacaaaagagctatgcacagaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccaatactgaccgaatcatgagtatttgggaggctaacacaaaagagctatgcacagaag 364

                                                                       
Query: 124 gtcagcataagctacagagcaagcaagaactcagttctcctcataaaatgcagtatatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtcagcataagctacagagcaagcaagaactcagttctcctcataaaatgcagtatatta 304

                                                                       
Query: 184 tatatgcaaagtaacaaagcttgagaagaaatctggacgatatgagggagttgggagaag 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tatatgcaacgtaacaaagcttgagaagaaatctggacgatatgagggagttgggagaag 244

                                                                       
Query: 244 tgcccatacagtacaaatgtttgcaaaaacgctatttacaaaaatttaaaa-taaaaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 243 tgcccatacagtacaaatgtttgcaaaaacgctatttacaaaaatttaaaaataaaaaaa 184

                                                                
Query: 303 accaaaactatttctacatatatattctcagtatacaaagaaaatgaaaggta 355
           |     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 a-----actatttctacatatatattctcagtatacaaagaaaatgaaaggta 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 756
Length adjustment: 9
Effective length of query: 346
Effective length of database: 747
Effective search space:   258462
Effective search space used:   258462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)