BAC Information

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BAC

Clone NameMSMg01-354M12
Chromosome1 (Build37)
Map Location 129,528,901 - 129,529,295
singlet/doubletsinglet
Overlap geneTmem163
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090
Downstream geneAcmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354M12.T7 (MSMg01no354_m12.b1)MSMg01-354M12.TJ (MSMg01no354_m12.g1)
ACCAG465326AG465327
length742738
length of high quality
(start - end)
247 (76 - 322)516 (79 - 594)
definitionCHROMAT_FILE: MSMg01no354_m12.b1 PHD_FILE: MSMg01no354_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:02 2005CHROMAT_FILE: MSMg01no354_m12.g1 PHD_FILE: MSMg01no354_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCACCTTCCCTATGAGAGGCACTGGGTTCCAGCCCCAGCC
CTGCCTAACCCTGTCCCCCCTGCGCTCTGGAGGTGGAGGTAGGCACATCA
GAAGTTGGAGGTTACGCTCACCTATGGAATGAGTTGGCAGCAGCAGCCTG
GGGGTACATTAGANATTAGCCGTTTTAAGAAGACATTTCCTGGGGCTGGT
GAGATGGCTCAGCGAGCAAGAGCACTGATTGCTCTTCCAAAGGTCCTGAG
TTCAAATCCCAGCAACCACATGTTGTTTTCATAACCATCCGTAATGAGGT
CTGACGCCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGCACTTACNCN
GNACATCAATCAGTCCTTCAATCAATCATTGGGCCAGAGCAACTGGGGCC
AGAGCAGGCAGAGGTCCTAAATTCAATTCCCTACATTCAGATGAAGGNTC
ACAACTACCTGTACAGCTACAGTGTGTACTCATATACATAAAACAGTTAC
TTAACTCTTANNACAGAAGACNTTTCCTGATCTGTATGGCGNATGCTCTT
TACCCTCCTGTACAGCTCTGCGGGCACTCTCGAATGNCCTCATACTACCC
CATTNCTTGTCTCTTTTAGAAATCCGAGCCAGGTATTTACTGGCTTCCCT
GGCCTGGCCGCCGCTTCACANGCCCCCTGTATTCCCTGNACN
NNCCCGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGGATCTCAACTTGGCTT
CTAATTAATAGCATTTTCCTGGCTCTGTCTCCCATGTGCTGGAATTATAG
ACATGCACCACCATTTGTTGCTCATTTTGACATACCCCTCCCATTTTGAG
ACAAAAGCTCATGAAGCCTAAGCTAGCCTCAAATTCCTTTTGTAGCCAAG
GATCACCTTGAACCTCTGGTCCTCCTGTGTCCAGCTCCTTAGTGTTAGGA
TTACAGGCCTGTGCCCTCACTTTTGTGTTATTAGATTCTCGATGAACTTT
AGTACATGCTGAACAAGCACTCTGCCAACTGAGCTGTACTCCCAGCTCCT
CATCAGGATACTGAGTAAAAAGTTTGACTGGTAAATCTTGGAACCAGATT
AGTTGAAGAGTGTGCTCATTCACACGGAGACTGCTTTGCGAATTCTATAT
GAAGCCTGCAATGGTAACTTGTGAGGGAGAGCGACGGAACCCAGAACCCA
TTAGACTTCTTACTCATCTTCTTTAATTAATTCAGTCTGATTTAGGATGA
GCTATCTAANAGTCATTTTTTTCCCAGACAGGGAAAATCTGAATTATTCA
TTTCTTAACCATAATGAGCTGGGCATATCGGTCCCTTGAGAAAATCATGC
TACCAATCTTAAAATTGGTTACCAGAGGTGGTTTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_m12.g1 MSMg01no354_m12.g1 CHROMAT_FILE:
MSMg01no354_m12.g1 PHD_FILE: MSMg01no354_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:02 2005
         (516 letters)



>mm_chr1_129528380_129529295
          Length = 916

 Score =  667 bits (345), Expect = 0.0
 Identities = 379/395 (95%), Gaps = 8/395 (2%)
 Strand = Plus / Minus

                                                                       
Query: 130 ctcatgaagcctaagctagcctcaaattccttttgtagccaaggatcaccttgaacctct 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 916 ctcatgaagcctaagctagcctcaaattccttttgtagccaaggatcaccttgaacctca 857

                                                                       
Query: 190 ggtcctcctgtgtccagctccttagtgttaggattacaggcctgtgccctcacttttgtg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 856 ggtcctcctgtgtccagctccttagtgttaggattacaggcctgtgccctcacatttggg 797

                                                                       
Query: 250 ttattagattctcgat--------gaactttagtacatgctgaacaagcactctgccaac 301
           ||||| ||||||||||        ||||||||||||||||||| ||||||||||||||||
Sbjct: 796 ttattcgattctcgatgaagtctagaactttagtacatgctgagcaagcactctgccaac 737

                                                                       
Query: 302 tgagctgtactcccagctcctcatcaggatactgagtaaaaagtttgactggtaaatctt 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 736 tgagctgtactcccagctcctcatcaggatactgagtaaaaagtttgactggtagatctt 677

                                                                       
Query: 362 ggaaccagattagttgaagagtgtgctcattcacacggagactgctttgcgaattctata 421
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 676 ggaaccagattagttgaagagtgtgctcactcacacggagactgctttgcgaattctata 617

                                                                       
Query: 422 tgaagcctgcaatggtaacttgtgagggagagcgacggaacccagaacccattagacttc 481
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 616 tgaagcctgcaatggtaacttgtgagggagagcgacagaacccagaacccattagacttc 557

                                              
Query: 482 ttactcatcttctttaattaattcagtctgattta 516
           |||||||||||||||||||||||||||||||||||
Sbjct: 556 ttactcatcttctttaattaattcagtctgattta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)