NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAACAGGGTCTGGTCTAATATTCCTGAGACATGTGTCAATG
GCTTACTCTAAAACCTGAGGGAAAATGCTGAAATCCTCAAAAGTCAATTA
ACCATTAATCGAATGAAAACATTTGCTAAACACAAGGAATTCTCACTTAT
TCACAAACGACAAAATAAGTCACAAATAAATATGAAAGAGAAAGATCCCG
TGAGGTTGTCTGTCTTAACTCTGCTGAGCGACACACAAATCCCATTCCAT
CTGGGGAAATGATTCATTCATCACTTCCACCTTATGGTACCATGCCATTC
CTTATGGTACCATGCCATTCCTTATGGTACCATGCCATTCCTTATGGTAC
CATGCCATTCCTTATGGTACCATGCCATTCCTTATGGTACCATGCCATTC
CTTTTATGGTACCATGCCATTCCTTATGGTACCATGCCATTCCTTATGGT
ACCATGCCATTCCTTATGGTACCATGCCATTCCTTTCTTTTTGCCATAGC
TTTACTATTGCCTAGGCATCCAACAGGAAGAGGAATTTGATGCCTTTAAA
TTAGATTCTGGAGTTTTCTGGGAAATTTTGTCTGACAAAATTCTGATGGG
CATACTCATCAGATAGACAACCCTCTAAGGAACGGGCTGTTAGCTATAAG
AATAATGTACCTCACTTAAGTACTAGCATGAAGCCAGTGGGG

NNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTATTAATTGTTGATATT
AATATCTACCTAATTGTGTTCAGAAATTTTTTTCCCTCTGCTAATAGATT
CATGTATATTCCCGAGTTTCATTCCCACCAGGTTCAGTATATCCAGTTTC
ATGTTGAGGTTTTCATGCATTTGAAATTGAGTTTTGTGATAAATGTGACT
ATATTTGGATGCTTCTATACATGACCATCAAGCTTTACCAGGACTTCTTG
TGAAAAATGCCATCCTTTATCCAATGTGTATTTCTGGATTTATCATCAAG
AGTCAAGTGTCCTTATGTGTCTTTAATTTGATGCCATTTGTCAACATGTC
TGTTTTGTGCCAGTTTTTATTATTATAGATCTGTAGTGCACCTTGAAATT
TTGAATTTTGACATCTCCAGCAGTCCATTCATTACTCAGGATTATTTTAT
GTATATCCCAGGTATTGTGTTTCCACTTGAAACTGATAAATGCCCTTTCA
AGATCTATGAAGAATTTGGCTGGAATTTTGATGGAGATTGCCTGGAACCT
GTAGATTGCTTTTTGTTTGAAATGTCCCTATTACTATTTTAATTCTTCAA
ATCCCTGATTCTATGAGAGCTTTCTTTTTCCTAAATATCTTTCTTCAATG
TTTTTTTTTCCATATCTGAAGTGTTCCCACCATATAATAATTCACCCCTC
CTT

Query= MSMg01no355_b19.b1 MSMg01no355_b19.b1 CHROMAT_FILE:
MSMg01no355_b19.b1 PHD_FILE: MSMg01no355_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:28 2005
         (612 letters)



>mm_chr1_150711775_150712786
          Length = 1012

 Score =  862 bits (446), Expect = 0.0
 Identities = 484/508 (95%), Gaps = 18/508 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaaacagggtctggtctaatattcctgagacatgtgtcaatggcttactctaa 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 490 gaattctcaaacagggtctggtctaatattcctgggacatgtgtcaatggcttactctaa 431

                                                                       
Query: 65  aacctgagggaaaatgctgaaatcctcaaaagtcaattaaccattaatcgaatgaaaaca 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aacctgagggaaaattctgaaatcctcaaaagtcaattaaccattaatcgaatgaaaaca 371

                                                                       
Query: 125 tttgctaaacacaaggaattctcacttattcacaaacgacaaaataagtcacaaataaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttgctaaacacaaggaattctcacttattcacaaacgacaaaataagtcacaaataaat 311

                                                                       
Query: 185 atgaaagagaaagatcccgtgaggttgtctgtcttaactctgctgagcgacacacaaatc 244
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 310 atgaaagagcaagatcccgtgaggttgtctgtcttaactctgctgagagacacacaaatc 251

                                                                       
Query: 245 ccattccatctggggaaatgattcattcatcacttccaccttatggtaccatgccattcc 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 ccattccatctggggaaatgattcattcatcactttcaccttatggtaccatgccattcc 191

                                                                       
Query: 305 ttatggtaccatgccattccttatggtaccatgccattccttatggtaccatgccattcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttatggtaccatgccattccttatggtaccatgccattccttatggtaccatgccattcc 131

                                                                       
Query: 365 ttatggtaccatgccattccttatggtaccatgccattccttttatggtaccatgccatt 424
           ||                  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tt------------------ttatggtaccatgccattccttttatggtaccatgccatt 89

                                                                       
Query: 425 ccttatggtaccatgccattccttatggtaccatgccattccttatggtaccatgccatt 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 88  ccttatggtaccatgccattccttatggtaccatgccattctttatggtaccatgccatt 29

                                       
Query: 485 cctttctttttgccatagctttactatt 512
           ||||||||||||||||||||||||||||
Sbjct: 28  cctttctttttgccatagctttactatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)