Query= MSMg01no355_c01.b1 MSMg01no355_c01.b1 CHROMAT_FILE:
MSMg01no355_c01.b1 PHD_FILE: MSMg01no355_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:29 2005
(606 letters)
>mm_chr1_22113411_22114415
Length = 1005
Score = 1141 bits (590), Expect = 0.0
Identities = 599/602 (99%), Gaps = 1/602 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatgctatccaatagatcaggcagctgcttgtctgttcagggtctataaccag 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattctcatgcta-gcaatagatcaggcagctgcttgtctgttcagggtctataaccag 747
Query: 65 gtgaataggccccttgccagtccagttttgtcagttcctatcaaagtaaggaaattgtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtgaataggccccttgccagtccagttttgtcagttcctatcaaagtaaggaaattgtgg 687
Query: 125 cctttcaaatgtcttatattgtataaggagaaaataaaactgaattgattgcaatgtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cctttcaaatgtcttatattgtataaggagaaaataaaactgaattgattgcaatgtttt 627
Query: 185 cttctctaaagaaagtgaatggaaagactctggagtcaggcagcagatagaaggaaagaa 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttctctaaggaaagtgaatggaaagactctggagtcaggcagcagatagaaggaaagaa 567
Query: 245 tgtaaagttctcttcccttgcttctttcctgggactctggagggtgcctaccaagactct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtaaagttctcttcccttgcttctttcctgggactctggagggtgcctaccaagactct 507
Query: 305 acccatcagtcaggagttagactgattcttagcatgggctagaccatcctggagggaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acccatcagtcaggagttagactgattcttagcatgggctagaccatcctggagggaaaa 447
Query: 365 gcacctatctaattattctagttatcatatgcatattgtaaaggttgttgtcctatgatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcacctatctaattattctagttatcatatgcatattgtaaaggttgttgtcctatgatc 387
Query: 425 ctagttacacacagaccttccaaatgaccactttttcttactactggcatctccactgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctagttacacacagaccttccaaatgaccactttttcttactactggcatctccactgtc 327
Query: 485 atcactgtcatcggaatttcaagggaagctaccattctttttcttaatcaatgcatatgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atcactgtcatcggaatttcaagggaagctaccattctttttcttaatcaatgcatatgc 267
Query: 545 tactatacacatgcacatatacacctcaagctggggactgacgtaacgcacactaccttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tactatacacatgcacatatacacctcaagctggggactgacgtaacgcacactaccttg 207
Query: 605 ca 606
||
Sbjct: 206 ca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space: 593020
Effective search space used: 593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_c01.g1 MSMg01no355_c01.g1 CHROMAT_FILE:
MSMg01no355_c01.g1 PHD_FILE: MSMg01no355_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:30 2005
(531 letters)
>mm_chr1_21909557_21910487
Length = 931
Score = 1007 bits (521), Expect = 0.0
Identities = 527/529 (99%)
Strand = Plus / Plus
Query: 1 aaaaggcacagggactgaatttaaatatcattgtcgttccagaataaattaacacagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggcacagggactgaatttaaatatcattgtcgttccagaataaattaacacagact 260
Query: 61 gcttttatgattttccctgaggattaagcttctcctttcaacagatagcaatttcatatt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gcttttatgattttccctgaggattaagcttctcctttcaacagataacaatttcatatt 320
Query: 121 ttaaaaaaatcccatggatgagaaatatagttgccctgatagtttaatgttagatcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaaaaatcccatggatgagaaatatagttgccctgatagtttaatgttagatcatga 380
Query: 181 gtaagccttatatagtctaagactgttttagccacacacttttgaaaatcaagtagtccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaagccttatatagtctaagactgttttagccacacacttttgaaaatcaagtagtccc 440
Query: 241 tgagtgccaatatataatgcctctggaaaacatgaacagggatttttaaagatttgtttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtgccaatatataatgcctctggaaaacatgaacagggatttttaaagatttgtttg 500
Query: 301 tttcattgtctcataaacacataagcaaagtaaaatgtctgtctcgccactgttacatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcattgtctcataaacacataagcaaagtaaaatgtctgtctcgccactgttacatgc 560
Query: 361 tcatacacatttactcactgagtaacaaagctattctatgaagtgagctcagaattagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatacacatttactcactgagtaacaaagctattctatgaagtgagctcagaattagct 620
Query: 421 gagagcagaaccttcctgtgaatattagaagatgcatctcaatacccaggccctagcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagcagaaccttcctgtgaatattagaagatgcatctcaatacccaggccctagcttc 680
Query: 481 ctcagactctccactaggcatcctttgaaacaagtctcaactccaatta 529
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ctcagactctccactaggcatcctttgaatcaagtctcaactccaatta 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
