Query= MSMg01no355_c12.b1 MSMg01no355_c12.b1 CHROMAT_FILE:
MSMg01no355_c12.b1 PHD_FILE: MSMg01no355_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:32 2005
(618 letters)
>mm_chr1_142469472_142470489
Length = 1018
Score = 1156 bits (598), Expect = 0.0
Identities = 610/614 (99%)
Strand = Plus / Minus
Query: 5 gaattctctcctcttccagacatgagtaacttacagaacaaagaaaccccgatcctggta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattctctcctcttccagacatgagtaacttacagaacaaagaaaccccgatcctggta 759
Query: 65 tggtgtccagtcccaaaagaagtctggtgatagaaatcatataatctttcacaaatgact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tggtgtccagtcccaaaagaagtctggtgatagaaatcatataatctttcacaaatgact 699
Query: 125 gcaatataaggaaaacatgtatacattatgtatgtcagacacaaagaagactgggaagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcaatataaggaaaacatgtatacattatgtatgtcagacacaaagaagactgggaagtt 639
Query: 185 tgaacacaaaaatgtttctggaaatctatttctagcatctcagtaagccttggtaaaatc 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgaacacataaatgtttctggaaatctatttctagcatctcagtaagccttggtaaaatc 579
Query: 245 agattaaaatatgtctcaacacttaaaataaccatttatagtaaaaccaattataaagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agattaaaatatgtctcaacacttaaaataaccatttatagtaaaaccaattataaagta 519
Query: 305 atatatgaaatacatgctatttagagatagtacatatactgagattgccatacaaggcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atatatgaaatacatgctatttagagatagtacatatactgagattgccatacaaggcat 459
Query: 365 ggtgctaacatgttatatagtttaaaacccaaacaaatacctctgattaaaataaaatgg 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggtgctaacatgttatatggtttaaaacccaaacaaatacctctgattaaaataaaatgg 399
Query: 425 tcaaattaataactttttaaattaatgctttaaaatatttcagccactcttttccctaag 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 tcaaattaataactttttaaattaatgctttaaaatatttcagccactcttttcccaaag 339
Query: 485 attaagctgctcagtagtaaaatgaaacctattttatacttcctttattatttttattat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 attaagctgctcagtagtaaaatgaaacctattttatacttcctttattatttttattat 279
Query: 545 atggattctttcccaaactatcacatcttaaaatacagtcattttttaaaaaatgaatca 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atgtattctttcccaaactatcacatcttaaaatacagtcattttttaaaaaatgaatca 219
Query: 605 ttatattttcttaa 618
||||||||||||||
Sbjct: 218 ttatattttcttaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_c12.g1 MSMg01no355_c12.g1 CHROMAT_FILE:
MSMg01no355_c12.g1 PHD_FILE: MSMg01no355_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:32 2005
(492 letters)
>mm_chr1_142366461_142367348
Length = 888
Score = 917 bits (474), Expect = 0.0
Identities = 486/492 (98%), Gaps = 4/492 (0%)
Strand = Plus / Plus
Query: 1 tatgtaattagatttcccttttctcctgacttgagaactactgaaaaaaataaaagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtaattagatttcccttttctcctgacttgagaactactgaaaaaaataaaagaaag 260
Query: 61 taaaatcacactgagtaagatcggagttaccaggtatttcaggacggtccttgacactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaatcacactgagtaagatcggagttaccaggtatttcaggacggtccttgacactga 320
Query: 121 gtagttcatcatcaaatcactcttgaagttatcacttcagatttttactcacttttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagttcatcatcaaatcactcttgaagttatcacttcagatttttactcacttttaaat 380
Query: 181 ttctacaaatacgggaaaccatacaagcaaacgtcttaactatgttttcaaagtattaat 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctacaaatatgggaaaccatacaagcaaacgtcttaactatgttttcaaagtattaat 440
Query: 241 ttattttactccattgtttcctgtctttttatttgcatttgattataattaaaggacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattttactccattgtttcctgtctttttatttgcatttgattataattaaaggacttc 500
Query: 301 tgctcatttttttttttttgctggagaccactgcttcctaacctgcctttagttgtgaag 360
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcattttttttt----gctggagaccactgcttcctaacctgcctttagttgtgaag 556
Query: 361 gatttgtctttaattaatcttcaaagttcatccctaattggtattcataaaaaattaatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatttgtctttaattaatcttcaaagttcatccctaattggtattcataaaaaattaatg 616
Query: 421 tctcttgcttctctagtttgacttatgaggaaatacctgtatagactttcctctactttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctcttgcttctctagtttgacttatgaggaaatacctgtatagactttcctctactttc 676
Query: 481 tactattttata 492
||||||||||||
Sbjct: 677 tactattttata 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 888
Length adjustment: 10
Effective length of query: 482
Effective length of database: 878
Effective search space: 423196
Effective search space used: 423196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
