BAC Information

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BAC

Clone NameMSMg01-355D24
Chromosome1 (Build37)
Map Location 68,275,240 - 68,326,717
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D24.T7 (MSMg01no355_d24.b1)MSMg01-355D24.TJ (MSMg01no355_d24.g1)
ACCAG465682AG465683
length764751
length of high quality
(start - end)		527 (47 - 573)197 (78 - 274)
definitionCHROMAT_FILE: MSMg01no355_d24.b1 PHD_FILE: MSMg01no355_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:39 2005CHROMAT_FILE: MSMg01no355_d24.g1 PHD_FILE: MSMg01no355_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,275,240 - 68,275,763)(68,326,524 - 68,326,717)
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGCCCATGGGATGCAGAGGCAGAGGAATCACTCTTAGTCAGTC
CATGCTACATAATAAGAAATTTTCTATAAAACCAAACCAAAATGTCAACA
AATTTCAGGAAAGTGAATATAGTAGCCAAAATGAAACTAAGAAGAAAATA
ACAATTCCTGATGACTGGCTTTCAGAAGTATAAAGCAAATTTGGTTTAAG
AGAAAATAGGAATATAAAAACTACAGACAGTACTTCCAATAGTTGAAATT
AAAAATGGAACCAGGATCACTAATATTAATCTAAATATCTATAAATCTGA
ATAAGCTCTCCTGCTATCTGCAAGCCCATAGTAGCATGTGACACTCCCTC
TCTACCTTCATAAGAACCTAGCAGCAAAAGGACCCAGATGTAGCTGTCTC
TTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGT
CAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTA
CCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACACATTATGAA
CTAAACAGTACCCCGGAGCTCTTGATTCTAGCTGCATATGTATCAAAAGA
TGGGCTATTCGGGCATCACTGGAAAAGAGAGACCAATTGGAAACCCAACT
TGGTATGCCCCCCTAACGGGGAAACGCCCGGCCCAAAAAAAAGGGGAAAG
GGGGGTATGGAAAA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTCTTGGGACAACCTGTTC
TTGGGGTACAGGATTTGGCATTTAAATAAATAGCAGCATCAGACCAATCC
CCAACAACTAGCAATATAATTATTTATTGTTATCAGTCTAGGTAGATAGG
CACATTGCAAATGAGAAAGCAGGGAATCTGAAAGACTGGGATGGATGGAT
GGATGGATGGATGGATGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTTTTTTTTTNNNNNNNNNNNNNNNNTTTNN
TNTTTTTTTTTTTNNTNTTTTNTNTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTNNTNTTTTNTTTTTTTTTTTTTNTTTTTNTTNTNTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTNTTTTNNTTNTTTNNTTNTTTTTTTTNNTTNTNTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTNNTTTTTTTNNTNTNTTTTTTTTTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d24.b1 MSMg01no355_d24.b1 CHROMAT_FILE:
MSMg01no355_d24.b1 PHD_FILE: MSMg01no355_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:39 2005
         (527 letters)



>mm_chr1_68275037_68275963
          Length = 927

 Score = 1013 bits (524), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagcccatgggatgcagaggcagaggaatcactcttagtcagtccatgctaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagcccatgggatgcagaggcagaggaatcactcttagtcagtccatgctaca 263

                                                                       
Query: 64  taataagaaattttctataaaaccaaaccaaaatgtcaacaaatttcaggaaagtgaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taataagaaattttctataaaaccaaaccaaaatgtcaacaaatttcaggaaagtgaata 323

                                                                       
Query: 124 tagtagccaaaatgaaactaagaagaaaataacaattcctgatgactggctttcagaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagtagccaaaatgaaactaagaagaaaataacaattcctgatgactggctttcagaagt 383

                                                                       
Query: 184 ataaagcaaatttggtttaagagaaaataggaatataaaaactacagacagtacttccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataaagcaaatttggtttaagagaaaataggaatataaaaactacagacagtacttccaa 443

                                                                       
Query: 244 tagttgaaattaaaaatggaaccaggatcactaatattaatctaaatatctataaatctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagttgaaattaaaaatggaaccaggatcactaatattaatctaaatatctataaatctg 503

                                                                       
Query: 304 aataagctctcctgctatctgcaagcccatagtagcatgtgacactccctctctaccttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataagctctcctgctatctgcaagcccatagtagcatgtgacactccctctctaccttc 563

                                                                       
Query: 364 ataagaacctagcagcaaaaggacccagatgtagctgtctcttgtgagactatgccgggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataagaacctagcagcaaaaggacccagatgtagctgtctcttgtgagactatgccgggg 623

                                                                       
Query: 424 cctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggctccca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggctccca 683

                                                       
Query: 484 atggaggagctagagaaagtacccaaggagctaaagggatctgc 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atggaggagctagagaaagtacccaaggagctaaagggatctgc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_d24.g1 MSMg01no355_d24.g1 CHROMAT_FILE:
MSMg01no355_d24.g1 PHD_FILE: MSMg01no355_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:39 2005
         (197 letters)



>mm_chr1_68326357_68326953
          Length = 597

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgtcttgggacaacctgttcttggggtacaggatttggcatttaaataaatagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttgtcttgggacaacctgttcttggggtacaggatttggcatttaaataaatagcagc 302

                                                                       
Query: 61  atcagaccaatccccaacaactagcaatataattatttattgttatcagtctaggtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcagaccaatccccaacaactagcaatataattatttattgttatcagtctaggtagat 242

                                                                       
Query: 121 aggcacattgcaaatgagaaagcagggaatctgaaagactgggatggatggatggatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggcacattgcaaatgagaaagcagggaatctgaaagactgggatggatggatggatgga 182

                         
Query: 181 tggatggatggatg 194
           ||||||||||||||
Sbjct: 181 tggatggatggatg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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