Query= MSMg01no355_g11.b1 MSMg01no355_g11.b1 CHROMAT_FILE:
MSMg01no355_g11.b1 PHD_FILE: MSMg01no355_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:51 2005
(544 letters)
>mm_chr1_141376745_141377688
Length = 944
Score = 963 bits (498), Expect = 0.0
Identities = 524/540 (97%), Gaps = 12/540 (2%)
Strand = Plus / Minus
Query: 5 gaattctaatctaggcacatttccaaatgtgaaatgcaacgtaagttctgtgcattctaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattctaatcgaggcacatttccaaatgtgaaatgcaacgtaagttctgtgcattctaa 558
Query: 65 aagtagcctggatgagagctgcagccctgtgcatttcttgtaacttcttttgtaccatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagtagcctggatgagagctgcagccctgtgcatttcttgtaacttcttttgtaccatca 498
Query: 125 gtcttcgataagaggactgtatggtaatggctgcctttcgtaactgcaagaattggtgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtcttcgataagaggactgtatggtaatggctgcctttcgtaactgcaagaattggtgca 438
Query: 185 atttatgcttggcataaagggtggctcggaatttcctctgcacaaatatagcagcttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atttatgcttggcataaagggtggctcggaatttcctctgcacaaatatagcagcttttc 378
Query: 245 tgagagcaatgaatcgtctccttactataaaagctctaaattgactctgaataagggttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgagagcaatgaatcgtctccttactataaaagctctaaattgactctgaataagggttg 318
Query: 305 cagaagaatgcatagtcttcagatgacctctggttttcatccccctaacggcagcctgaa 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 317 cagaagaatgcatagtcttcagatgacttctggttttcatccccctaacggcagcctgaa 258
Query: 365 ggattacagcagcatgcttttgcctctgcagttctgcagctgtgtgtacttggtattgcc 424
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggattacagcagcatgcttttgcctctgcagttctgcagctgtgtgtac----------- 209
Query: 425 tttggatcacaactgaggcccgcttcaaatgctggtacctcatataggctccctgcatcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 208 -ttggatcacaactgaggcccgcttcaaatgctggtacctcatataggctccgtgcatcc 150
Query: 485 ggaaagtggcctgaatcacagtagtcgccctgtgcatcttttgcacccttttccttacca 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 149 ggaaagtggcctgaatcacagtagccgccctgtgcatcttttgcacccttttccttacca 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_g11.g1 MSMg01no355_g11.g1 CHROMAT_FILE:
MSMg01no355_g11.g1 PHD_FILE: MSMg01no355_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:51 2005
(468 letters)
>mm_chr1_141209120_141209987
Length = 868
Score = 874 bits (452), Expect = 0.0
Identities = 464/468 (99%)
Strand = Plus / Plus
Query: 1 cacataaacaaaaatactaattcactaagccataggcaggtgttttaactaacatagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacataaacaaaaatactaattcactaagccataggcaggtgttttaactaacatagtca 260
Query: 61 ttcttgtcagctttccatcaattctgacttttcaggaacattatacctcttgttgaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgtcagctttccatcaattctgacttttcaggaacattatacctcttgttgaacag 320
Query: 121 ccatattggtttctgtcaaagcacaaaaacaatggcttcccactttgattgaatctcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatattggtttctgtcaaagcacaaaaacaatggcttcccactttgattgaatctcctt 380
Query: 181 tgtataaccccaaacctaatatttggggatactggaatataatctccactctgttcccag 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tgtataaccccaaacctaatatttggggatactggactataatctccactctgttcccag 440
Query: 241 aaaaatgcaaagtagctgtataaaatgcatcaatatacccaattcaaataacttcaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatgcaaagtagctgtataaaatgcatcaatatacccaattcaaataacttcaaaag 500
Query: 301 aagaaaaggagataagagtatgaaatagcaatgggataatgaactattcttatgggtgag 360
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 501 aagaaaaggagataagagtatgaaatagaaatgggataatgaattattcttatgggtgag 560
Query: 361 gtaactacacaaatatattacagacaaacctatatgttcacagctcatattgattcctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaactacacaaatatattacagacaaacctatatgttcacagctcatattgattcctac 620
Query: 421 aggtcaacatgattagaaaacaagacatattacaagattaatctaaaa 468
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 aggtcaacatgattagaaaataagacatattacaagattaatctaaaa 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
