BAC Information

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BAC

Clone NameMSMg01-355H23
Chromosome1 (Build37)
Map Location 66,347,761 - 66,508,240
singlet/doubletdoublet
Overlap geneMtap2
Upstream genePthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355H23.T7 (MSMg01no355_h23.b1)MSMg01-355H23.TJ (MSMg01no355_h23.g1)
ACCAG465872AG465873
length758772
length of high quality
(start - end)		511 (50 - 560)418 (81 - 498)
definitionCHROMAT_FILE: MSMg01no355_h23.b1 PHD_FILE: MSMg01no355_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:58 2005CHROMAT_FILE: MSMg01no355_h23.g1 PHD_FILE: MSMg01no355_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,507,821 - 66,508,240)(66,347,761 - 66,348,178)
sequence
NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAGCCCAGCGTCTGCTCAAGGACTACCTAGGTCATTGGTG
AAGGCCAGGAAGCAATGTTCGATTTTGCTTAGGTATTTGGCAAGTCATTG
CTTGGAGGCACCTATAACAAAACAATACTGAAAGGAAGCACACAGATCCA
TTCTCAAGGACAAAATTGGAGTATACGTGCTATGGAATGCCACAGTTCCA
GGAGACTAAGTTTCCGTGAAACTCTTTGCCTCAGGACTGCATCCAGGCTT
TTTGCCTGTCATGCCTTTCACTACTGGAGTGGATGTAGCATCAGACAGTC
ACTGAGCCCACATCCCAAGTCTTTTACCTTTTAGAAAGCACTATGCTGTC
TCCAGATGTATTATCCAGATGTGATATCCTTTCACATGTTGCTTCTCAAT
TGAGGTGACAAATGTTCGAAGAAAGCCAAGAATCAGTTTTCTGACCAATA
GCAATCACCATAGTAAATGATAGATCTTTGTATCCATGAGCGTTATTAAT
ATCTCACTGTGGGAGGTGTTGCATTTAATGTAGCACTTTCCCAAAGGTGG
TCTCAAGTGAGATCGAAAGAAGTAAGAAGTTACTGGACTTTCAGAATCAT
CNTAGAGGAAATTGGAAGAGCAATTTAATATATATCAGCCCCGAAAGCTA
GTCTCTCTCACAGAAGAGAGAGTGTTTTTGAATTATCCACATGCCCAGTT
GCTATATG

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCTAGTGCTTAAAACA
ATAAAGCCATCTGACAACTAGTTTGTGGTATGATTTGAACACAATGTGAG
AAAGTAGGCCCCTGTGGGCTAGCCAGGAAACACAAGTAATGCTAATGCTC
TCCTTCTCAAGTTGGGAAATGCCAGTCTTCCACTCCCATCTTTCACACAG
GATTAATTATGAAACATGGCCTTGCTCTCTATTTCTGTAGTGTGTAGCTG
GCATGGTACTTGTCATTGTGCTAATGACGTATTCCAGTTGTTTTATTCAG
GGCTAGCTCTGGGCAAGGGAAGCTTTCTGCTTGAGTATATTGGAAAAAAA
CACCTTCAGCATTTCTTTGAAGATTTGTGATTCTCCTATTTATTAGTCTT
CTTGTGTTAGGCAAATTTATTTTTCTGAGTTTTAACTTCATCATTTGTGA
TGAATAACAATTTCTTAATTATAAGGCAAGCCTCATAAAGTTCTCCTACT
CTCCCCTCTACTGCTTGGAAAGACAGAAATCCCAGTTGGTACCAAATTCC
TCTGATGCAGCTCCCTTCATCCTTTGTGACATATGCCTGGAAACTTGCTT
TTAACCCCAGCCTTCTGGCCGGGTTTATTTGTAAGGGTTTCCCCCTCCAA
ATTATCAAAAATTTGGATCCCCCAAGGAGGGGGCCAAAATATTTTTTGTG
TGGCTCCACGCCAGGAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_h23.b1 MSMg01no355_h23.b1 CHROMAT_FILE:
MSMg01no355_h23.b1 PHD_FILE: MSMg01no355_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:58 2005
         (511 letters)



>mm_chr1_66507330_66508240
          Length = 911

 Score =  812 bits (420), Expect = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Minus

                                                                       
Query: 92  caagtcattgcttggaggcacctataacaaaacaatactgaaaggaagcacacagatcca 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 caagtcattgcttggaggcacctataacaaaacaatactgaaaggaagcacacagatcca 852

                                                                       
Query: 152 ttctcaaggacaaaattggagtatacgtgctatggaatgccacagttccaggagactaag 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttctcaaggacaaaattggagtatacgtgctatggaatgccacagttccaggagactaag 792

                                                                       
Query: 212 tttccgtgaaactctttgcctcaggactgcatccaggctttttgcctgtcatgcctttca 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttccgtgaaactctttgcctcaggactgcatccaggctttttgcctgtcatgcctttca 732

                                                                       
Query: 272 ctactggagtggatgtagcatcagacagtcactgagcccacatcccaagtcttttacctt 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ctactggagtggatgtagcatcagacagtcactgagcccacatcccaagtcttttacctt 672

                                                                       
Query: 332 ttagaaagcactatgctgtctccagatgtattatccagatgtgatatcctttcacatgtt 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttagaaagcactatgctgtctccagatgtattatccagatgtgatatcctttcacatgtt 612

                                                                       
Query: 392 gcttctcaattgaggtgacaaatgttcgaagaaagccaagaatcagttttctgaccaata 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcttctcaattgaggtgacaaatgttcgaagaaagccaagaatcagttttctgaccaata 552

                                                                       
Query: 452 gcaatcaccatagtaaatgatagatctttgtatccatgagcgttattaatatctcactgt 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcaatcaccatagtaaatgatagatctttgtatccatgagcgttattaatatctcactgt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_h23.g1 MSMg01no355_h23.g1 CHROMAT_FILE:
MSMg01no355_h23.g1 PHD_FILE: MSMg01no355_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:58 2005
         (418 letters)



>mm_chr1_66347561_66348378
          Length = 818

 Score =  808 bits (418), Expect = 0.0
 Identities = 418/418 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacctagtgcttaaaacaataaagccatctgacaactagtttgtggtatgatttgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacctagtgcttaaaacaataaagccatctgacaactagtttgtggtatgatttgaac 260

                                                                       
Query: 61  acaatgtgagaaagtaggcccctgtgggctagccaggaaacacaagtaatgctaatgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgtgagaaagtaggcccctgtgggctagccaggaaacacaagtaatgctaatgctc 320

                                                                       
Query: 121 tccttctcaagttgggaaatgccagtcttccactcccatctttcacacaggattaattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttctcaagttgggaaatgccagtcttccactcccatctttcacacaggattaattat 380

                                                                       
Query: 181 gaaacatggccttgctctctatttctgtagtgtgtagctggcatggtacttgtcattgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacatggccttgctctctatttctgtagtgtgtagctggcatggtacttgtcattgtg 440

                                                                       
Query: 241 ctaatgacgtattccagttgttttattcagggctagctctgggcaagggaagctttctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatgacgtattccagttgttttattcagggctagctctgggcaagggaagctttctgc 500

                                                                       
Query: 301 ttgagtatattggaaaaaaacaccttcagcatttctttgaagatttgtgattctcctatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagtatattggaaaaaaacaccttcagcatttctttgaagatttgtgattctcctatt 560

                                                                     
Query: 361 tattagtcttcttgtgttaggcaaatttatttttctgagttttaacttcatcatttgt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattagtcttcttgtgttaggcaaatttatttttctgagttttaacttcatcatttgt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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