Query= MSMg01no355_j11.b1 MSMg01no355_j11.b1 CHROMAT_FILE:
MSMg01no355_j11.b1 PHD_FILE: MSMg01no355_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:05 2005
(627 letters)
>mm_chr1_195821565_195822591
Length = 1027
Score = 1168 bits (604), Expect = 0.0
Identities = 619/624 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatgatttgtctctggaaaatgtggcctctaacagtatatttcctttacattat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ggaattcatgatttgtctctggaaaatgtggcctctaacagtatatttcctttacattat 580
Query: 64 tctggagaatttagccataactacttttgaaggcagagcaaacttaggttgaaaaacaaa 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 579 tctggagaatttagccataactacttttgaaggcagaacaaacttaggttgaaaaacaaa 520
Query: 124 gaaaccctgtcttcctcacatactccatcagaagaaagctcattctcttcctgataatac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaaaccctgtcttcctcacatactccatcagaagaaagctcattctcttcctgataatac 460
Query: 184 cataaaaaaactcaataacaaagcaactccagcatccaacattaacatcaggttaaggac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cataaaaaaactcaataacaaagcaactccagcatccaacattaacatcaggttaaggac 400
Query: 244 atggccacactgtttgttaataaaagctccctggggttctgttagttgaaagcaagaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atggccacactgtttgttaataaaagctccctggggttctgttagttgaaagcaagaaga 340
Query: 304 atgagctgcaatcaacttccttgaaatattttctagaaacttctatgtctaagtcacctt 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 339 atgagctgcaatcaacttccttgaaacattttctagaaacttctatgtctaagtcacctt 280
Query: 364 aagttcttaggtgaactctacaagtatttaattttgtatgctgtttagggtcgtacttca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aagttcttaggtgaactctacaagtatttaattttgtatgctgtttagggtcgtacttca 220
Query: 424 aaaggtatggatattttagctcatttttttggagtggttgcctagcatgtacaagatgct 483
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 219 aaaggtgtggatattttagctcatttttttggagtggttgcctagcatgcacaagatgct 160
Query: 484 gggttcaatctccaacattacataaactagatgtagtagtatatgtttgctatctcaaca 543
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 159 gggttcaatctccaacattacataaactagatgtagtagtacatgtttgctatctcaaca 100
Query: 544 cttggtaggtagagtcaactggatcaaaaattcaaggccattgcttatctatgttttaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 cttggtaggtagagtcaactggatcaaaaattcaaggccattgcttatctatgttttaag 40
Query: 604 ttgaggccagtctgggctacatga 627
||||||||||||||||||||||||
Sbjct: 39 ttgaggccagtctgggctacatga 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_j11.g1 MSMg01no355_j11.g1 CHROMAT_FILE:
MSMg01no355_j11.g1 PHD_FILE: MSMg01no355_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:05 2005
(619 letters)
>mm_chr1_195717936_195718955
Length = 1020
Score = 961 bits (497), Expect = 0.0
Identities = 582/619 (94%), Gaps = 19/619 (3%)
Strand = Plus / Plus
Query: 1 attaagctaattgatgtgaaaagacccagatcactggtgggaggtcctgaactacagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagctaattgatgtgaaaagacccagatcactggtgggaggtcctgaactacagaag 260
Query: 61 agtagagaaatcaagctgagcataagcaaacaggtgagcaggcatgcattcatttccttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagagaaatcaagctgagcataagcaaacaggtgagcaggcatgcattcatttccttc 320
Query: 121 tactcttgactataggtgttccagctgttagaagttcctgccatgacttctccacaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactcttgactataggtgttccagctgttagaagttcctgccatgacttctccacaataa 380
Query: 181 tagactgtaacctttattccctaacttgctttttattagggtgtgttttatgacagcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagactgtaacctttattccctaacttgctttttattagggtgtgttttatgacagcaac 440
Query: 241 agatttgatgccaaataccctgtgtccttccttcctcccacc-tcttactcatctttgtc 299
||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct: 441 agaaatgatgccaaataccccgtgtccttccttcctcccaccatcttactcatttttgtc 500
Query: 300 ctctagacagtcctatttctatttctaccttcctgtcatatgcacatgcataactgtctc 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctagacagtcctatttctacttctaccttcctgtcatatgcacatgcataactgtctc 560
Query: 360 tatctgtctgtctatctatctatctatctatctatctatctatctatctatccatcttat 419
||||||||||||| ||||||||| |||| |||| ||| |||||||||| |
Sbjct: 561 tatctgtctgtctgtctatctatttatccatct---tat--atctatctat--------t 607
Query: 420 atctatctatctctctatccatctatctatctatctatctatctatctatctatctatct 479
|||||||||||| |||||| ||||||||||||||||||||||||||| |||||| || |
Sbjct: 608 atctatctatctatctatctatctatctatctatctatctatctatc-atctatggatat 666
Query: 480 atctatcatctatgggtatatctatcatctatctatgtatctatcatctatggatttatg 539
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 667 atctatcatctatggatatatttatcatctatctatgtatctatcatctatgtatttatg 726
Query: 540 catatatcatctatct----atctatcttctatttatttatctaaagagagatataaata 595
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 727 tatatatcatctatctgtctatctatcttctatttatttctctaaagagagatataaata 786
Query: 596 aatatatttatagatagag 614
|||||||||||||||||||
Sbjct: 787 aatatatttatagatagag 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
