BAC Information

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BAC

Clone NameMSMg01-355N07
Chromosome1 (Build37)
Map Location 87,501,878 - 87,502,268
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355N07.T7 (MSMg01no355_n07.b1)MSMg01-355N07.TJ (MSMg01no355_n07.g1)
ACCAG466124AG466125
length760791
length of high quality
(start - end)
554 (43 - 596)391 (70 - 460)
definitionCHROMAT_FILE: MSMg01no355_n07.b1 PHD_FILE: MSMg01no355_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:23 2005CHROMAT_FILE: MSMg01no355_n07.g1 PHD_FILE: MSMg01no355_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGCCAATTTCTGAGTATATCTATCCTAATTATACATTCTGGAACTGGG
GAAATCACCACAGGATGTGTCCGGGGACCTACTGGACCTACTGTGAGTCA
GACATCAGTCAAAACTCCATTACTCACCTGCCCTCCATAAGCCCCTACTT
TAACTGGAGGGCCACAATGTTTCTTGGGATCCCCTGGGATCAGTGTCAAC
TCAGAACCAGTATCCAGCAGACCCCGAAAAGTCTGATTATTTCCTTTTCC
CCAGTGTACAGTTAGTTACCCTTGTAAAAGGCCGTAGGTCCCTCTGGGGA
AGAACTGGAGAAAGGGTAACAGCAAAACCTTTGAGTGTCTTATCAAGATC
CTTCCTCAGCGGAACCTGGCCACCCCTTCATTCAAGGGGTTCTGGATCTG
CAAACTGTCTCAAGCCTGGAAATTGATTCACTGGCCGAGATTGCTGTTTA
CCATGATCTAATGTAGCCTTTCTTTCATTTGGCTGTTTACCACTAGCTAA
TGTAGCCTTTCTTTCATTTGTTTGAGAATTTTTCTGCTTATACAGATTAT
ACAAATATGCAGTCAGGCTTCCTATGGATTTCATTTCCCGGAAAACCCCA
GATTGGTTAGTCTGCACCCTTCGTCCCACCCATTCTTGTCCTTACTAATT
TTACCCCTCTCGTGGCTGATCTTCACGGGTGTTCGTTATTATCTAACCTC
CTTTTGTTTA
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATATTCATAGCTTGTGTCTGTCTTACCTTCGCTA
GCCTGAGTAGAGATTTAATAATGTATTGATCTTTCCAAAGGATGTGAGCA
TAATGCCCACTTCTTTTAATTGTATGGATTTCTACTTTAATTTCATTGAA
TCTTTGTCTTCATTGGGATGAAATCATTCCTCATAAGATTGTTCATTTAT
GCCTCTCTTAGCTTCTGACACATACAAAGCTGTATGTTTCCCATTAGCCA
CTGACTTTGCTGTGTCTTATATTTAATAATTTTTAGACTTCAGTGCTTTT
TTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCATTTAAAA
AAAATTACATTCATTTATTTATTGTATGTGTGCAGGTGCCACAATGTGTT
TTTTGAGATCAGAGGACAACTTTGGGGAGTTGGTTCTCTCCTACTATCGC
GTATTTAGCTCTTAGGTGAGCTAGTTCATGTCCGATGACTTGCTGGCCAG
TCCTGCATCTTCTTATCTCTTTTTCCATATCCCCTTTTATTTACATTTAT
TACACGCCTCTATATTTACTCTGTTCTTAAAATTCGTTTTCACTAATAAC
TTACTCCACACTTTTCATTTCTTTTCGCCCCACCCACCAATTTCTTACTC
TGGTTTGCTACAATATTCTTCTCTTCATCGCTTTTTTATTTTGGACTTTA
CCTTTCCCTTCACCACGTCTCNATTTTCCTTCTTACATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_n07.g1 MSMg01no355_n07.g1 CHROMAT_FILE:
MSMg01no355_n07.g1 PHD_FILE: MSMg01no355_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:23 2005
         (391 letters)



>mm_chr1_87501678_87502468
          Length = 791

 Score =  679 bits (351), Expect = 0.0
 Identities = 381/391 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatagcttgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatagcgtgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattga 260

                                                                       
Query: 61  tctttccaaaggatgtgagcataatgcccacttcttttaattgtatggatttctacttta 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tctttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctacttta 320

                                                                       
Query: 121 atttcattgaatctttgtcttcattgggatgaaatcattcctcataagattgttcattta 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 atttcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcattta 380

                                                                       
Query: 181 tgcctctcttagcttctgacacatacaaagctgtatgtttcccattagccactgactttg 240
           |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 381 tgcctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgcctttg 440

                                                                       
Query: 241 ctgtgtcttatatttaataatttttagacttcagtgcttttttagtgtaggagaaagggt 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgtctcagatttaataatttttagacttcagtgcttttttagtgtaggagaaagggt 500

                                                                       
Query: 301 cacacttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattgtatgt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacccttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattgtatgt 560

                                          
Query: 361 gtgcaggtgccacaatgtgttttttgagatc 391
           |||||||||||||||||||| ||||||||||
Sbjct: 561 gtgcaggtgccacaatgtgtcttttgagatc 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)