Query= MSMg01no355_n21.b1 MSMg01no355_n21.b1 CHROMAT_FILE:
MSMg01no355_n21.b1 PHD_FILE: MSMg01no355_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:26 2005
(544 letters)
>mm_chr1_89951365_89952310
Length = 946
Score = 990 bits (512), Expect = 0.0
Identities = 536/544 (98%), Gaps = 4/544 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctttctca-caaa-tgtatcctttagggagtatcctgcttctgtgtgacctct 61
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttc-caacaaaatgtatcctttagggagtatcctgcttctgtgtgacctct 262
Query: 62 agcactctctacctcttcttagtgactctcactgtctctcctggtgagcttcaattccta 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 agcactctctacctcttcttagtgactctcactgtctctcctgctgagcttcaattccta 322
Query: 122 tgctgtataaatgaccatgaggtggttgtagaggccccttttaggcagtgtcttactttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgctgtataaatgaccatgaggtggttgtagaggccccttttaggcagtgtcttactttt 382
Query: 182 tctaaattgtcaacatccaaaacattgtttcataactcattccaaattgtttctgaaata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctaaattgtcaacatccaaaacattgtttcataactcattccaaattgtttctgaaata 442
Query: 242 gacatcatgatctttcctaggcaaagtattagacctttttttgtcagtagagcacaagat 301
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 gacatcatgatctttcctaggcaaagtattagacctttttttgtcaggagagcacaagat 502
Query: 302 aggtatttcagtcagtgaagttaatta-ttattgttcttttgtgaataattaacctgaat 360
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 503 agttatttcagtcagtgaagttaattaattattgttcttttgtgaataattaacctgaat 562
Query: 361 ttaacatcacttgcaaacatgcaaatacatgtgtccactgcagtaggtcttgtgcctcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaacatcacttgcaaacatgcaaatacatgtgtccactgcagtaggtcttgtgcctcta 622
Query: 421 cttttaaaccagctctattagaaaagcttacagtaaaagcgactggattgctctggactg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttttaaaccagctctattagaaaagcttacagtaaaagcgactggattgctctggactt 682
Query: 481 tgaatttaccatggttcctgcagcctttcccacctctcttcctctgtgtgtgtgtctgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgaatttaccatggttcctgcagcctttcccacctctcttcctctgtgtgtgtgtctgct 742
Query: 541 cctg 544
||||
Sbjct: 743 cctg 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space: 499824
Effective search space used: 499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_n21.g1 MSMg01no355_n21.g1 CHROMAT_FILE:
MSMg01no355_n21.g1 PHD_FILE: MSMg01no355_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:26 2005
(427 letters)
>mm_chr1_90093650_90094476
Length = 827
Score = 621 bits (321), Expect = 0.0
Identities = 330/333 (99%)
Strand = Plus / Minus
Query: 95 caatcagatttaggattgttaaaaatcctttcccaacctgttggtggcctttttgtctta 154
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 827 caatcagatttaggattgttaaaaatccattcccaacctgttggtggcctttttgtctta 768
Query: 155 ttgacagtgtcttttgccttacagaagttttacaattttatgaggtcccatttgtcgatt 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttgacagtgtcttttgccttacagaagttttacaattttatgaggtcccatttgtcgatt 708
Query: 215 ctcaatcttacagcacatgccattcgtgttctgttcaggaatttttcccctgtgcccata 274
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 707 ctcaatcttacagcacatgccattcctgttctgttcaggaatttttcccctgtgcccata 648
Query: 275 tcttcgaggtttttccccacatgagcactttcataacatgcttaagtagctttgaaataa 334
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 647 tcttcgaggtttttccccacatgagcactttcataacatgcttaagtaactttgaaataa 588
Query: 335 tttacttgtacacggatgttgccaatgtcttaatagttaaccatcaatcttggctaaaaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tttacttgtacacggatgttgccaatgtcttaatagttaaccatcaatcttggctaaaaa 528
Query: 395 ttaaatcttgcccttttaaaagtaaaattcctg 427
|||||||||||||||||||||||||||||||||
Sbjct: 527 ttaaatcttgcccttttaaaagtaaaattcctg 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
