BAC Information

Click to search

BAC

Clone NameMSMg01-355O23
Chromosome1 (Build37)
Map Location 107,927,390 - 107,927,843
singlet/doubletsinglet
Overlap geneZcchc2
Upstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504
Downstream geneEG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355O23.T7 (MSMg01no355_o23.b1)MSMg01-355O23.TJ (MSMg01no355_o23.g1)
ACCAG466200AG466201
length760773
length of high quality
(start - end)		614 (51 - 664)454 (80 - 533)
definitionCHROMAT_FILE: MSMg01no355_o23.b1 PHD_FILE: MSMg01no355_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:31 2005CHROMAT_FILE: MSMg01no355_o23.g1 PHD_FILE: MSMg01no355_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCCAGACTTTCAAAGAAGAGCTAATACCAATACTCCTCA
AGCTATTACACGACATAGAAACAGAAGAAGCACTGACAAATGCATTCTAT
GAGGCCACAGTTACCCTGATACCTAAACCAGACAAAGATCATGTTGAATC
TTTGCTAAAAAGACAGAATTTCAGACCAATTTCTCTCAGGAACATTGTTG
AAAAAACACTCAATAAAATACAAACTAAATCCAAGAACATATCAGAAAGA
TCATCCACCATGATCAAGTAGTAAGCTTCATCCCAGAGATGCAGGGTGGT
TCAACATATGAAAATCTGACAGTCTAATCCACTATATAAACAAATGGAAA
GAAACCACACAATCATCTCATTTGATGCTGGAAAAGCCTTTGACAAAATC
CAACAGTTCTTCTTTATACAAGTCTCAGAGAGATCGGGGATAAAAGGGAC
ATACTTAAATATAATAAAGCCAACTTAACAGCAAGCCTATAGCCAACATC
AAATTAAATGGAGAGAAAGCCAAAGCAATCCAATTGAAATCTGGAACAAG
ACAAGGCTGCTTACTCTTACCATATTTATTTAATATAGTACTTGAAATTC
TAGCTAGAGCAATAACACAACTAAAGGAGAATCAGGGNAGGTACAAATTG
GAAAGGATAAACTCAAAGTATCATCATTTTCAGATGATATATTTATGAGC
AACTCCAAAA

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAACAAGTCCTCTGGGAGT
TAGTGGGATTACCTTGCTGATTGGCCTCCATGGATGACTGCTTACAGTCT
TGTGCATAGTGTCCGCTTACACCACAATTGTAACATGAGACATTCCCATT
CTTCTTGGGCCCAGAACCACTGGTGTTGGCAACTACATTAGGTGCTGGAT
ATACAGGATACAATCTCCCAAATCCTGCCATCTGCTGCATGCCATAGCTG
GCTTGGCTCCCCATGACTGGGTCATGCACCAGTCCATTTGCATATGGAGT
CTGAGGCAGAAAAAAAGGAAGTTGATTTCCATTGCTCTGATGTGCTTGGT
TGAGGTAGCTGCCATTGCAAATGGATGGCAGAGTGAAGAATGATGGGAGT
CGGTACATTGGTCCAGGCATTGGGTTGGGATAATAGTAACTATTTAGCTG
GAGGTTTCCATTGGTCCCGCAGCTGCACCTTCGCCCACAAGAACCACAGG
GACCCATCTGCTGTGGTGGCACTATGGTCCCGTTAGCATTCGTGGTGCCC
ACAGCACTGATGTACGACGTGCTGTCCCTCTGTGGAAAAATGTGTGTAAG
GGCAGGGTTGGGGCTCCTGGTAAGGCCCTGTGGTGTTGGTATAAACAAAA
AGGGGAAATTGTTACCTGATAGTAATGAATCTCCGGCCCTTCTTGTTGTC
GAAACAAGGTCTCCCTCTACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_o23.g1 MSMg01no355_o23.g1 CHROMAT_FILE:
MSMg01no355_o23.g1 PHD_FILE: MSMg01no355_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:31 2005
         (454 letters)



>mm_chr1_107927190_107928043
          Length = 854

 Score =  870 bits (450), Expect = 0.0
 Identities = 453/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaacaagtcctctgggagttagtgggattaccttgctgattggcctccatggatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaaaacaagtcctctgggagttagtgggattaccttgctgattggcctccatggatgact 595

                                                                       
Query: 61  gcttacagtcttgtgcatagtgtccgcttacaccacaattgtaacatgagacattcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcttacagtcttgtgcatagtgtccgcttacaccacaattgtaacatgagacattcccat 535

                                                                       
Query: 121 tcttcttgggcccagaaccactggtgttggcaactacattaggtgctggatatacaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcttcttgggcccagaaccactggtgttggcaactacattaggtgctggatatacaggat 475

                                                                       
Query: 181 acaatctcccaaatcctgccatctgctgcatgccatagctggcttggctccccatgactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acaatctcccaaatcctgccatctgctgcatgccatagctggcttggctccccatgactg 415

                                                                       
Query: 241 ggtcatgcaccagtccatttgcatatggagtctgaggcagaaaaaaaggaagttgatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 414 ggtcatgcaccagtccatttgcatatggagtctgaggcagaaaaaaaggaagttggtttc 355

                                                                       
Query: 301 cattgctctgatgtgcttggttgaggtagctgccattgcaaatggatggcagagtgaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cattgctctgatgtgcttggttgaggtagctgccattgcaaatggatggcagagtgaaga 295

                                                                       
Query: 361 atgatgggagtcggtacattggtccaggcattgggttgggataatagtaactatttagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgatgggagtcggtacattggtccaggcattgggttgggataatagtaactatttagct 235

                                             
Query: 421 ggaggtttccattggtcccgcagctgcaccttcg 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ggaggtttccattggtcccgcagctgcaccttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |