Query= MSMg01no356_e22.b1 MSMg01no356_e22.b1 CHROMAT_FILE:
MSMg01no356_e22.b1 PHD_FILE: MSMg01no356_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:00 2005
(567 letters)
>mm_chr1_16596036_16597002
Length = 967
Score = 1042 bits (539), Expect = 0.0
Identities = 557/563 (98%)
Strand = Plus / Plus
Query: 5 gaattcatctaggcttacacaattgataataatgagccatcggctcctaacagcctatct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctaggcatacacaattgataataatgagccatcggctcctaacagcctatct 264
Query: 65 cagacactcagtcacttcacctgaactctaattctgctccacaatgacatttcatttcag 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 cagacactcagtcacttcacctgaactctaactctgctccacaatgacatttcatttcag 324
Query: 125 aattgtgtctgctcacagaaaatagccattaagcaaaatattttgagaaaagtactaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattgtgtctgctcacagaaaatagccattaagcaaaatattttgagaaaagtactaagg 384
Query: 185 ctatcttatatttgaataagaaatataattctttaatagaactacaattgtgtagaaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctatcttatatttgaataagaaatataattctttaatagaactacaattgtgtagaaaaa 444
Query: 245 caggaagtacataatcatttctatagttttaaatttgattctttaggccttccagaggat 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaaatacataatcatttctatagttttaaatttgattctttaggccttccagaggat 504
Query: 305 taaaccttaaaaatgtcttaggtctcctaaacactacactggaaacaaaaagatgcatga 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 taaaccttaaaaatgtcttaggtctcctaaacacttcactggaaacaaaaagatgcatga 564
Query: 365 caactaatccaatttacagtgttcatctaatccttactatgtatgcaaagacacaggttt 424
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 caactaatccagtttacagtgttcatctaatccttcctatgtatgcaaagacacaggttt 624
Query: 425 aaactgtacatcagaatcacctatggaggggctggagagatggatcagcagctaagagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaactgtacatcagaatcacctatggaggggctggagagatggatcagcagctaagagca 684
Query: 485 ctggctgctcttccagagggcctgggttccactcccaacacccacatggcagctcacagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctggctgctcttccagagggcctgggttccactcccaacacccacatggcagctcacagc 744
Query: 545 tgtctttaactctagttccagga 567
|||||||||||||||||||||||
Sbjct: 745 tgtctttaactctagttccagga 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_e22.g1 MSMg01no356_e22.g1 CHROMAT_FILE:
MSMg01no356_e22.g1 PHD_FILE: MSMg01no356_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:00 2005
(390 letters)
>mm_chr1_16758680_16759469
Length = 790
Score = 609 bits (315), Expect = e-179
Identities = 376/405 (92%), Gaps = 15/405 (3%)
Strand = Plus / Minus
Query: 1 catgctttcatcttacgtggcaaaccaagcctcttctgggcctggaggtcagcccaatat 60
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catgctttcatctaatgtggcaaaccaagcctcttctgggcctggaggtcagcccaatat 447
Query: 61 taccaagttgattattaccaaacagatgttgccttcttctatcaccatgtcccaaggaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taccaagttgattattaccaaacagatgttgccttcttctatcaccatgtcccaaggagg 387
Query: 121 aatggttactgttatcccagccacagtggttacctcccgtgggctccaggtaggccaaac 180
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 aatggttactgttatcccaggcacagtggttacctcccgtggtctccaggtaggccaaac 327
Query: 181 aagtacagctactattcagccaagccagcaggcccagactgtaacccagtcagtgttgca 240
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 326 aagtacagctactattcagccaagccagcaggcccagattgtcacccggtcagtgttgca 267
Query: 241 ggcagcagcagctgctgctgcttccatgcaactgcctccaccccgattacagccctctcc 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 266 ggcagcagcagctgctgctgcttccatgcaactgcctccaccccgactacagccccctcc 207
Query: 301 -----a----------ttgcaacagatgcctcagcccccaactcaacagcaagtcaacat 345
| ||||||||||||||| ||||||||| |||||||||| ||| |||
Sbjct: 206 gttgcagccccctccgttgcaacagatgcctaagcccccaattcaacagcaaatcaccat 147
Query: 346 tctacagcaaccccctccacttcaggccatgcagcaacctccacc 390
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tctacagcaaccccctccacttcaggccatgcagcaacctccacc 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
