BAC Information

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BAC

Clone NameMSMg01-356F02
Chromosome1 (Build37)
Map Location 91,418,624 - 91,663,707
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F02.T7 (MSMg01no356_f02.b1)MSMg01-356F02.TJ (MSMg01no356_f02.g1)
ACCAG466489AG466490
length726709
length of high quality
(start - end)		555 (47 - 601)438 (58 - 495)
definitionCHROMAT_FILE: MSMg01no356_f02.b1 PHD_FILE: MSMg01no356_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:00 2005CHROMAT_FILE: MSMg01no356_f02.g1 PHD_FILE: MSMg01no356_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,663,156 - 91,663,707)(91,418,624 - 91,419,061)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCTTATTTACCGGTGAACGGGCCACAGACAGAATGCCACAGGCA
AAGCAAGCTGCAGCAGCCAGTGCACGGAGCACGCTGCATAATTCATGCTG
TCACACAAACATCAAAGGCAGTTTCCAGGGTGCCACATCTGTCCCCCAAG
AAGCAGGCCACACTTGTCAAAAAAAAGTGGAAATCTAGGAGAGACGACAG
AGGGGATTCCCCAGAACTTAGAAGTTACTCCAGGAATCCTCAAGACTGAG
AGGCAGATGAATCGACTCAACAGTACAAAATACATGCGGATAGTGAGATG
CCAGCAATCCTGGTAGGGCGGAAGACTGGGATATAACATTTGACATCCCT
TTTCAACTGCACTATGTCCCTATTACCTAACCACAGGTAAGACATCTGTC
CCCTCTGCAGCCTCCACTCTTAGATCTGACCAATGAAAAGGATTTAAGGT
CTACGCCCTGAGCAGAGGACAGATGGATGATGGGATGTAGATGAGATAGG
AGATCAAGGACAAAGTGCTCACAGGTGATTGGTGAGACATGCGTGCCACT
GTCAGAGCAGCCCATGGCACCATGCTCCCAGTGGAGCATGGGCACCCTGG
GCATTGAACCCAGCCCCTGGCTTTCACAGAAGACCCGGAGACGGCCTCAT
TTTGTGCCCCTTCTTACACTGCTGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTGGAAGGGTGAAAGATCCTCGCTTGAGCTCCAGACAGCTGG
TGAGTGAAAGGCAGCCAGAGACACAGCTGTCCTTGAGTTGTGCTTCTGCC
AAGTCAAAATAACAGGTATGGGGTTGAGATTCCGAGCTCAGCCTGTGCAG
TGCCTGCTGTGTGCTAGGCCTTCTTGAAAGGACGAAACACACCCTTTTGT
TTTCAGTCCTTGCCGTGGAGCGCTGTCCTCTGAGCACAGTGTGGGTGTCA
CGGGAGCAGCCGTGGCTACGTGCGAGAGACTCTCAAGCCATGGCTCCTTG
ACAGGTGGCGTTCCCTCAGAGTAGGAGAGGTGTAGGGAGGCTCATTGGAC
CCTCAGCTGAGCTCAGTCACTCTCTTTTGCACTCACTGGCCAGTTATATG
TTAATTCTGGCTAAATTGCACGTGGTCTGGGTGAAGTACTATAGATGGCG
CAATGCTAACTACTACTATGATTCTTATACTGCTATGGGGAATTCGCCAT
CCATGCCGTCCCCGACGCTCCTCATTGCTATCTGTTCCTGGAGATAATCC
CTCTTTTTGCCCTTTCCTAATACTCGTTGTGTCTAATTGTCACCTTTACT
TTGCCTATCCCTTTTTCTCCATCTCCTTTCTTTTCTCCCCCTCTTCTCCA
TTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f02.b1 MSMg01no356_f02.b1 CHROMAT_FILE:
MSMg01no356_f02.b1 PHD_FILE: MSMg01no356_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:00 2005
         (555 letters)



>mm_chr1_91662953_91663907
          Length = 955

 Score = 1036 bits (536), Expect = 0.0
 Identities = 548/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccttatttaccggtgaacgggccacagacagaatgccacaggcaaagcaagct 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ggaattcccttaaataccggtgaacgggccacagacagaatgccacaggcaaagcaagct 696

                                                                       
Query: 64  gcagcagccagtgcacggagcacgctgcataattcatgctgtcacacaaacatcaaaggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gcagcagccagtgcacggagcacgctgcataattcatgctgtcacacaaacatcaaaggc 636

                                                                       
Query: 124 agtttccagggtgccacatctgtcccccaagaagcaggccacacttgtcaaaaaaaagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agtttccagggtgccacatctgtcccccaagaagcaggccacacttgtcaaaaaaaagtg 576

                                                                       
Query: 184 gaaatctaggagagacgacagaggggattccccagaacttagaagttactccaggaatcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaaatctaggagagacgacagaggggattccccagaacttagaagttactccaggaatcc 516

                                                                       
Query: 244 tcaagactgagaggcagatgaatcgactcaacagtacaaaatacatgcggatagtgagat 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 515 tcaagactgagaggcagatgaatcgactcaacagtacaaaatacgtgcggatagtgagat 456

                                                                       
Query: 304 gccagcaatcctggtagggcggaagactgggatataacatttgacatcccttttcaactg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gccagcaatcctggtagggcggaagactgggatataacatttgacatcccttttcaactg 396

                                                                       
Query: 364 cactatgtccctattacctaaccacaggtaagacatctgtcccctctgcagcctccactc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cactatgtccctattacctaaccacaggtaagacatctgtcccctctgcagcctccactc 336

                                                                       
Query: 424 ttagatctgaccaatgaaaaggatttaaggtctacgccctgagcagaggacagatggatg 483
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttagatctgaccaatgaagaggatttaaggtctacgccctgagcagaggacagatggatg 276

                                                                       
Query: 484 atgggatgtagatgagataggagatcaaggacaaagtgctcacaggtgattggtgagaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atgggatgtagatgagataggagatcaaggacaaagtgctcacaggtgattggtgagaca 216

                       
Query: 544 tgcgtgccactg 555
           ||||||||||||
Sbjct: 215 tgcgtgccactg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_f02.g1 MSMg01no356_f02.g1 CHROMAT_FILE:
MSMg01no356_f02.g1 PHD_FILE: MSMg01no356_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:00 2005
         (438 letters)



>mm_chr1_91418424_91419261
          Length = 838

 Score =  770 bits (398), Expect = 0.0
 Identities = 428/438 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggaagggtgaaagatcctcgcttgagctccagacagctggtgagtgaaaggcagcca 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggaagggtgaaagatccttgcttgagctccagacagctggtgagtgaaaggcagcca 260

                                                                       
Query: 61  gagacacagctgtccttgagttgtgcttctgccaagtcaaaataacaggtatggggttga 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacacagctgtccttgagttgcgcttctgccaagtcaaaataacaggtatggggttga 320

                                                                       
Query: 121 gattccgagctcagcctgtgcagtgcctgctgtgtgctaggccttcttgaaaggacgaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gattccgagctcagcctgtgcagtgcctgctgtgtgctaggccttcttgaaagggcgaaa 380

                                                                       
Query: 181 cacacccttttgttttcagtccttgccgtggagcgctgtcctctgagcacagtgtgggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacccttttgttttcagtccttgccgtggagcgctgtcctctgagcacagtgtgggtg 440

                                                                       
Query: 241 tcacgggagcagccgtggctacgtgcgagagactctcaagccatggctccttgacaggtg 300
           |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 441 tcacgggaacagccgtggctacgtgcgagagactctcaagccatgactccttgacaggcg 500

                                                                       
Query: 301 gcgttccctcagagtaggagaggtgtagggaggctcattggaccctcagctgagctcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gcgttccctcagagtaggagaggtgtagggaggctcattggaccctcggctgagctcagt 560

                                                                       
Query: 361 cactctcttttgcactcactggccagttatatgttaattctggctaaattgcacgtggtc 420
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacactcttttgcacttactggccagttatatgttaattctggctaaattgcacgtggtc 620

                             
Query: 421 tgggtgaagtactataga 438
           ||||||||||||| ||||
Sbjct: 621 tgggtgaagtactgtaga 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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