BAC Information

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BAC

Clone NameMSMg01-356J24
Chromosome1 (Build37)
Map Location 75,874,123 - 75,874,648
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356J24.T7 (MSMg01no356_j24.b1)MSMg01-356J24.TJ (MSMg01no356_j24.g1)
ACCAG466721AG466722
length762855
length of high quality
(start - end)		530 (65 - 594)45 (78 - 122)
definitionCHROMAT_FILE: MSMg01no356_j24.b1 PHD_FILE: MSMg01no356_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:24 2005CHROMAT_FILE: MSMg01no356_j24.g1 PHD_FILE: MSMg01no356_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
CACGCTTTCCTGCAGTTCCTATTTTTAGCCAGGGTTTGGGCTATAAACTT
GAAAGTTTTCGAGTTTTTGTTTGCCATTTTGGAGCTTTGATTTTAAAACC
AACTGAAAAGTTTGCCTGCTTGCTTGCTTTCTCTTCAGTGTGAATTTTTA
CTGTTCTTTTTAAAGACAGTTTGCACTTTCAGAATGATGTAATGAAGACT
ACTTTGCAGGCTTGGATGATTAAAAAAAGAAAAGCAGAAGGGCAAAGAGA
TGAAAGAAGATAGGTACCTGTCATTATCTGGGTAAAGAGGGCCTCCATTT
ATGTGTCTGTCTTTCCGTCTGTCTGTCTACCTGCCTTACTGTCTATCCTA
GTATTGATTCAATCATTCAGATACTTGCTGCCTAGCCTTATCTCTCATCT
ATTTCTCAACTTGTAAAATAGATTATTCCACATACGATAAATAAATAATT
TTTTTTTAAAAAAAGGGCAGGCAAAATGGCTTACGGGATAAAGGCACTTG
CAACCAAGTTCAATGACCTGAACTCAGAACCTGAGTCCCACATGGTATAG
AGAGAACCAACTCTTGCATGTTGTCCCCTGACTTATGAATACATGGGTAT
TGTGGCATATGGACCTACCCCACCTAGAGAAAGGATTTAAAAATTACTTA
TTATCCTTTGTGTGGGCGCGAAAGGTTGAATTTGTGGAAGCATGCCACCC
TTCCCCCGGTCN

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCGGCAATCTGTCCATGGAGGAGGGGGAAGTAG
AGGAGAACATGNCAGGATGGCAGAGACAGGGGCATTGAAAGATTAGAGTA
ACAGAGGCAGAGAAACTGAAACTCCAAAAAGCCAGCCCTAATGGATAGAA
ACGTTACAAGGAAAGAAACTGTGGCCATCTACCATAGGCAAAGACAGAAG
TCGGAAGAAATATTGTTTTTAGCCATTGCTATTCCACGAAAATGACTTCA
GATGAATCCCACTGCCCGCGCCAGGCTTTTTTTTTTTCTAACAAANACAC
CGGGGGAACCAACGACTTTTCCCCCCCCCCCCCTCTCCTGGTGTTACTCT
TTTCCCACCTTTTCCCGTTCCCCCCCCTTCTTTATCCTTCTTTACCCCCC
CTTTATTCCCTCCTTGCCCTTCCTTCTTCCCTTGTTTTCTTCAATTCCCC
CCGACTTTAATCCCATTCGTCCCCCTTCATTTCCTTCTTTAACCCCCCCC
CCTCTATTTTTATCCCTGCTTCCACCAACCTCTACCCCTTCCATAACAAT
TTTCTTTTTTTTTATCCGTCTCGCTTCTCTCTGGCTTTTCCCCCCTCCCC
TTTTTTCCTTTCTCTGTTCCATCCCTTCACCTTTTCTCTCCTTTTGACCC
CCCAACCCTGAACCACCAATTTGTTTCCACCCTTTTTTTTTTCCTTCATT
TTTTTCCCCATCATATCTCCCCCTTTCCCTTATTTCCCATTTCCCCATTT
CTCTATACTCACACTTCCCTACTTTTCTGCCCCCCCTTCTCCACTTCCTT
TTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_j24.b1 MSMg01no356_j24.b1 CHROMAT_FILE:
MSMg01no356_j24.b1 PHD_FILE: MSMg01no356_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:24 2005
         (530 letters)



>mm_chr1_75873923_75874849
          Length = 927

 Score =  963 bits (498), Expect = 0.0
 Identities = 521/530 (98%), Gaps = 4/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcctatttttagccagggtttgggctataaacttgaaagttttcgagtttttgtttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcctatttttagccagggtttgggctataaacttgaaagttttcgagtttttgtttgc 260

                                                                       
Query: 61  cattttggagctttgattttaaaaccaactgaaaagtttgcctgcttgcttgctttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttggagctttgattttaaaaccaactgaaaagtttgcctgcttgcttgctttctct 320

                                                                       
Query: 121 tcagtgtgaatttttactgttctttttaaagacagtttgcactttcagaatgatgtaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtgtgaatttttactgttctttttaaagacagtttgcactttcagaatgatgtaatg 380

                                                                       
Query: 181 aagactactttgcaggcttggatgattaaaaaaagaaaagcagaagggcaaagagatgaa 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagactactttgcaagcttggatgattaaaaaaagaaaagcagaagggcaaagagatgaa 440

                                                                       
Query: 241 agaagataggtacctgtcattatctgggtaaagagggcctccatttatgtgtctgtcttt 300
           ||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||
Sbjct: 441 agaagataggtacctgtcat---ctgggtaaagagggcttccatttatgtgtctgtcttt 497

                                                                       
Query: 301 ccgtctgtctgtctacctgccttactgtctatcctagtattgattcaatcattcagatac 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 ccgtctgtctgtctacctgccttactgtctatcctagtatttattcaatcattcagatac 557

                                                                       
Query: 361 ttgctgcctagccttatctctcatctatttctcaacttgtaaaatagattattccacata 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 ttgctgcctagccttatctctcatctatttctcaacttgtaaaataaattattccacata 617

                                                                       
Query: 421 cgataaataaataatttttttttaaaaaaagggcaggcaaaatggcttacgggataaagg 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 cgataaataaataatttttttt-aaaaaaagggcaggcaaaatggcttacgggataaagg 676

                                                             
Query: 481 cacttgcaaccaagttcaatgacctgaactcagaacctgagtcccacatg 530
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cacttgcaactaagttcaatgacctgaactcagaacctgagtcccacatg 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 927
Length adjustment: 10
Effective length of query: 520
Effective length of database: 917
Effective search space:   476840
Effective search space used:   476840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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