XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGCTCCTAGCATGAGATTCAGGGTGCCAGGCTTACATAGCAAGCCCCATT
ACTCGAGGAGCCAACTCTTGATCCCACCACACATCTCTGGCGCACAAAAA
CTACTGCTTGCTTTAAGAAATGAGCTCTGGAATCTTCTGTTTCTCCCCCA
CAGTCTCTCTCCTCCCTTTCCCCTCCCTCTGTCGTCGTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTCTCCTCCTCC
TCCTCTTCTTCTTCTTCTCCTCCTCCTCCTCTTCCTCCCTCTCCTCCTCC
TCCCTCTCCTTTTCCTCCTCCTCCCTCTCCTCTTCCTCCTCCTCCCTTTC
CTCTTCCTCCCTCTTCCTCCACTCTCTTCCTCCTCCTCTTCCTCCTTTTC
TTCTTTATTCTTTTATTTTTATTTAAACAGCCCAGGTTCTGCAAATCACT
GGGGGTGCTCTTCTATGTTCCATGCCTTCATGGAACACGGATAGTCTCCC
AGCCCCCAGTAACAGAGAGCACCTCACTGCTTTGGCAAAATCCAGCCTTC
CGGTTGTGGTCTCTTAGTCAGAAGAATAACTGCCACTGTGGGGTGCCACA
AACACAAAAACTTCTCTCTAAAGGTATCAAAAAGAAAACTAATTTTCTTG
TCCCCCCGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTT
TTTGTTTTGTTTTGTTTTCATTTTCATTTATTCTGTGCAGTTTAAAGAGG
CAGTTAAAACATACAAACCATGGAAGCTTTAGATATTCTAAGACAGGAAC
ACCATTCATTTGCATCTCTCTCATCTGTATTTTACATCTTGTCATACACA
GGTGCTATTAACACGCACAGTTCCAATTCCTCACAAAGGACCTGTCAAGC
AGCAAGATGATCATGCATTGCGGCACACAGCAGAAAGGCTCCTGTAAGAA
ACCACAGCAGCAGTATCTGGCGAATGGTTATGCATAGAACTGGCGTGGAG
CTTAATGCTAGGAAGTCCTCAACAGGTAGTATGTGTTCTAACAAATGGAG
ATGCAGCTTCTACTGACACAGGATAAAATGGAACTTGTTAGAAGTTTCAA
ACTCTGGGACACTTTAACAGAAGACAATACAAGGTTTCTTAATTCTATAT
TCTACAACCCAGTGTCATTCTACAGCCACCTGAGCATATCTCCCTGCTCT
GAGGACTGAATATTGGCTTTCCTGAAGTCACTTTCAATATAAAAGCCCTT
ATTTTTACATTTGAGACCTGTTTTGTAACTGGGTATATTGCCCCATTTAG
CACCCCTTCTTTGAAAAAATGGGCTTTATAAAAAATTGCCTTCGGTGTTT
TTTACCCCCTTTTTTTTTTGTTTTTG

Query= MSMg01no356_l12.b1 MSMg01no356_l12.b1 CHROMAT_FILE:
MSMg01no356_l12.b1 PHD_FILE: MSMg01no356_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:32 2005
         (482 letters)



>mm_chr1_85282515_85283396
          Length = 882

 Score =  710 bits (367), Expect = 0.0
 Identities = 438/481 (91%), Gaps = 37/481 (7%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggctcctagcatgagattcagggtgccaggcttacatagcaagccccattac 63
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggctcctagaatgagattcagtgtgccaggcttacatagcaagccccattac 263

                                                                       
Query: 64  tcgaggagccaactcttgatcccaccacacatctctggcgcacaaaaactactgcttgct 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tcgaggagccaactcttgatcccaccacacatctatggcgcacaaaaactactgcttgct 323

                                                                       
Query: 124 ttaagaaatgagctctggaatcttctgtttctcccccacagtctctctcctccctttccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaagaaatgagctctggaatcttctgtttctcccccacagtctctctcctccctttccc 383

                                                                       
Query: 184 ctccctctgtcgtcgtcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 243
           |||||||||| |||         |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctccctctgtagtc---------ttcttcttcttcttcttcttcttcttcttcttcttct 434

                                                                       
Query: 244 tcttcttcttcttcttcttcttcttcttcttcttcttcctcttcctcttcctcttcttct 303
           ||||||||||||||||||||||||||||||||||||||||||||         |||||||
Sbjct: 435 tcttcttcttcttcttcttcttcttcttcttcttcttcctcttc---------ttcttct 485

                                                                       
Query: 304 cctcctcctcctcttcttcttcttctcctcctcctcctcttcctccctctcctcctcctc 363
           ||||||||||||||||        ||||  ||| |||||||||||||||||||| |||||
Sbjct: 486 cctcctcctcctcttc--------ctcc--ctc-tcctcttcctccctctcctcttcctc 534

                                                                       
Query: 364 cctctccttttcctcctcctccctctcctcttcctcctcctccc--tttcctcttcctcc 421
           ||||||||    ||  ||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 535 cctctcct----ct--tcctccctctcctcttcctcctcctccccctttcctcttcctcc 588

                                                                       
Query: 422 ctcttcctccactctcttcctcctcctcttcctccttttcttctttattcttttattttt 481
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctcttcctcctctctcttcctcctcctcttcctccttttcttctttattcttttattttt 648

            
Query: 482 a 482
           |
Sbjct: 649 a 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 170
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)