Query= MSMg01no356_l13.b1 MSMg01no356_l13.b1 CHROMAT_FILE:
MSMg01no356_l13.b1 PHD_FILE: MSMg01no356_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:32 2005
(658 letters)
>mm_chr1_32025852_32026911
Length = 1060
Score = 1185 bits (613), Expect = 0.0
Identities = 643/655 (98%), Gaps = 6/655 (0%)
Strand = Plus / Plus
Query: 8 ttcagtttccctttttgtaacagccatgatggtagtttactgggttaaatgtttctggaa 67
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcagtttcccattttgtaacagccatgatggtagtttactgggttaaatgtttctggaa 267
Query: 68 acattagactttattgttaatctgtaatggtccaatagaagcatagggcttagaaaatag 127
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acattagtctttattgttaatctgtaatggtccaatagaagcatagggcttagaaaatag 327
Query: 128 taacaaatactactcactatttagtataaagaaggcaaatggaaaagtgtgtgagtcagc 187
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taacaaatactactcactgtttagtataaagaaggcaaatggaaaagtgtgtgagtcagc 387
Query: 188 tgattgtgctctctcaaattactctttgacccacagagctaatgaagacagtaggtttac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgattgtgctctctcaaattactctttgacccacagagctaatgaagacagtaggtttac 447
Query: 248 cagactcctctttgtgaaggtctaatgtcaagttgagatattttcttctgaactttgaca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagactcctctttgtgaaggtctaatgtcaagttgagatattttcttctgaactttgaca 507
Query: 308 aattgctctgaactcttgagttcattcacaatacttgtttctagaaaacattatctctct 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aattgctctgaactcttgagttcattcacaatacttgtttctagaaaacattatctctct 567
Query: 368 tgcttctaaataatttaccctagaaaataatgatggtccaactaataattgggtgaaaca 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgcttctaaataatttaccctagaaaataatgatggtccaactaataattgggtgaaaca 627
Query: 428 aatgttgaatctatatagctaaaggatttaagaagaaaagaatacatacaagaacacaag 487
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatgttgcatctatataactaaaggatttaagaagaaaagaatacatacaagaacacaag 687
Query: 488 gtctagttttaagaactggtgggaatgttgagactaaattttaaggtacagtaaaattct 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gtctagttttaagaactggtgggaatgttgagactaaattttaaggtacagtaaaattct 747
Query: 548 aattaagactctt--gtgatagggtataaagtgaataaattacaatacagtaattaatga 605
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aattaagactcttttgtgatagggtataaagtgaataaattacaatacagtaattaatga 807
Query: 606 aaaaagagtatgttttccttacataattaccaagaccatt--annagtaacataa 658
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct: 808 aaaaagagtatgttttccttacataattacaaagaccattgaa--agtaacataa 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space: 680400
Effective search space used: 680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_l13.g1 MSMg01no356_l13.g1 CHROMAT_FILE:
MSMg01no356_l13.g1 PHD_FILE: MSMg01no356_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:32 2005
(508 letters)
>mm_chr1_32185361_32186268
Length = 908
Score = 619 bits (320), Expect = 0.0
Identities = 346/364 (95%), Gaps = 16/364 (4%)
Strand = Plus / Minus
Query: 145 tagggaaatagaatcagcctagatgtatatcaactgataataggtaatgaaaatgtggta 204
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 908 tagggaaatagaatcagcctagatatatatcaactgataataggtaatgaaaatgtggta 849
Query: 205 tatgtacacaatggactgaaaataaaaagtaagccaagaaatgtgagaagaaatacagtc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tatgtacacaatggactgaaaataaaaagtaagccaagaaatgtgagaagaaatacagtc 789
Query: 265 tcagaaatacaaatgcttcatgctctttcatacatataagatctctctctctctctttct 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 788 tcagaaatacaaatgcttcatgctctttcatacatataagatctctctctctct--ttct 731
Query: 325 ctctctctctctctctctctctctctctctctctctgtgtttctatatatttgtgtatct 384
|||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 730 ctctctctctctctctctctgt--------------gtgtttctatatatttgtgtatct 685
Query: 385 gtgaacattagaatagggaccataaaatggggggaaagagttttgagggaaggaagaggg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgaacattagaatagggaccataaaatggggggaaagagttttgagggaaggaagaggg 625
Query: 445 ccatacagcacatcgacatgaaaacagagaaagggctactgagagtagtatgctataact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccatacagcacatcgacatgaaaacagagaaagggctactgagagtagtatgctataact 565
Query: 505 ggtc 508
||||
Sbjct: 564 ggtc 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
