Query= MSMg01no356_p06.b1 MSMg01no356_p06.b1 CHROMAT_FILE:
MSMg01no356_p06.b1 PHD_FILE: MSMg01no356_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:49 2005
(363 letters)
>mm_chr1_27895644_27896405
Length = 762
Score = 629 bits (325), Expect = 0.0
Identities = 351/361 (97%), Gaps = 5/361 (1%)
Strand = Plus / Minus
Query: 5 gaattccatataata--tcccacagtaacatgaattatacttcttctttgaccatctata 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaattccatataataagt--cacagtaacatgaattatacttcttctttgaccatctata 505
Query: 63 taactgcaaatgttaaggatcgctcaagaagttcataaatattntcctgaagacaagaag 122
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 taactgcaaatgttatggatcgctcaagaagttcataaatatt-tcctgaagacaagaag 446
Query: 123 gtcattacacatgtggaatcagtggcattgactacttacataagacatgtatgaaatttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcattacacatgtggaatcagtggcattgactacttacataagacatgtatgaaatttt 386
Query: 183 gagattttgtcagtctcttttctaatcattgctttcaaaatatatatttgtattggatat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagattttgtcagtctcttttctaatcattgctttcaaaatatatatttgtattggatat 326
Query: 243 ctggttttactctacaggtactttgggtgacgaatcctgcctattttcactcacagttct 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ctggttttactctacaggtactttgggtgatgaatcctgcctattttcactcacagttct 266
Query: 303 accttggcacatgttgacccagacctaattctattcttaaagttctagatgagaaataaa 362
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 265 accttggcacatgttgtcccagacctaattctattctcaaagttctagatgggaaataaa 206
Query: 363 g 363
|
Sbjct: 205 g 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 762
Length adjustment: 9
Effective length of query: 354
Effective length of database: 753
Effective search space: 266562
Effective search space used: 266562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_p06.g1 MSMg01no356_p06.g1 CHROMAT_FILE:
MSMg01no356_p06.g1 PHD_FILE: MSMg01no356_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:49 2005
(486 letters)
>mm_chr1_27700029_27700914
Length = 886
Score = 901 bits (466), Expect = 0.0
Identities = 481/486 (98%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgactcccaagtac 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 201 actctgtagaccaggctggccttgaactcagaaatccacctgcctctgactcccaagtgc 260
Query: 61 tgggattaaaggcatgtgctaccactgccctgcttctctttattttttaaccactataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgggattaaaggcatgtgctaccactgccctgcttctctttattttttaaccattataat 320
Query: 121 ttatgttatgcattcaagtacatgcttttattaacaaagcttatagtctaagaatacttg 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttatgttatgcattcaagtacatgcttttaataacaaagcttatagtctaagaatacttg 380
Query: 181 taagtatcaagcaatggctcaaataaggtttataatatgtttcacatccaaaacaaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtatcaagcaatggctcaaataaggtttataatatgtttcacatccaaaacaaaaca 440
Query: 241 aaacaaaaaataaaaacaaacaaaaacaaaaacaacaacaacaacaaacccaaaaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaaaaaataaaaacaaacaaaaacaaaaacaacaacaacaacaaacccaaaaaaaca 500
Query: 301 aactcgataactgaaaaaaatcattctccacttccttccctccaccatgttatcctttca 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactccataactgaaaaaaatcattctccacttccttccctccaccatgttatcctttca 560
Query: 361 ctacattccctagccttaggaaaccacgtaaataaatatatgtttattttgcttattcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacattccctagccttaggaaaccacgtaaataaatatatgtttattttgcttattcta 620
Query: 421 cccatgtattttcactctagataactaattattcatcccaataggaatctttagagaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccatgtattttcactctagataactaattattcatcccaataggaatctttagagaaag 680
Query: 481 agaatc 486
||||||
Sbjct: 681 agaatc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
