BAC Information

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BAC

Clone NameMSMg01-357D07
Chromosome1 (Build37)
Map Location 121,845,029 - 122,059,679
singlet/doubletdoublet
Overlap geneGm101, Sctr, Tmem37, Dbi, 3110009E18Rik
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177
Downstream geneSteap3, C1ql2, Marco, En1, AI848258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357D07.T7 (MSMg01no357_d07.b1)MSMg01-357D07.TJ (MSMg01no357_d07.g1)
ACCAG467164AG467165
length750746
length of high quality
(start - end)		476 (49 - 524)423 (78 - 500)
definitionCHROMAT_FILE: MSMg01no357_d07.b1 PHD_FILE: MSMg01no357_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:08 2005CHROMAT_FILE: MSMg01no357_d07.g1 PHD_FILE: MSMg01no357_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,059,208 - 122,059,679)(121,845,029 - 121,845,451)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCTACGTGCAAAAACTGTCTCTGAACTCCATGAGCTGAACT
GCTGTGAACTGAACTGACTCTCCCTGCACAGTTTCATTTCTTTTCTCTCC
TCTCAACCAGCAGAGAGGAGAGCTGACACTGTACCCTAACACTCATCAAC
ACCCAGTGCACTGTCCTGTCCCCACAGGAAAGACAAGAACCAGGGGACCA
GGGTAGGTGAAAAGCCTTTCCTAAGCGAGAAAAGGCAACTGTTAGACAGC
CACACCCACCCAAAGAACCTCTCCACACCTGTCAGGACCCACTGCTTCTG
CAATTTCTTCCTGTTTTTCTGCCAGTTCCCCTGAATATGCACACATGCTG
TGATGCAATGGGGTTAATGAGTCAGTAATTGAATGATGCATTTTCTACCC
CAGTGAGTCTCTGATGGTTACACTAGCTTATTAAAATAATATTGTGGNGT
GTATGTATGTGTGTATGTATGTATGTTTGCCCACCCCCATATTTATTCTT
TCCTTTATTCCTATTATTTTATTTTCTCTCTTTACCCCACAACAAATATT
CATCATTTTCTACCCTTTTCCCTATCATTTCTCCTTCCACTTTCCTCTCT
CTTCCTATCTATCACTCATCTTCCTCTCCCCCTTTCCCCTATTTTCACAC
CATTTTTACCTCTCCTACTTCCCACACTTTCCTTCATAATTCTAACTTAA


NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTTGGTCTTCAAACTGAGAG
CAGCGGATGCTCTTACCGCTCCGCCAGCTCTCCAGCCTGCACTTGTTTCT
TGAGACAGTCTCGAGCTCAGTGTGGTGCTCGCTGATTTGAATAGACCATA
TCTCCAGGGCTATAGGTATATGCCACCATCTGACGTTTTTATGTGGGTGT
TGAACTCAGGTCTTCAAGCTTGCATGGCAAGCACTTTACCAACCAAGACA
TCTCCCCAGACAGTAATGATAAGTTTCGGCATTTTATTTGCAATTTTGTA
GTGTCCTAGTTAGCTTTAGCTTGTCACAGCCTAGTGTTATCTGAGAAGAC
AGTCTCAGCTGAAGAATTTCCTAGATCAGGCTGGCCTGTGGGCAGGTATA
TGTGGGTAGGGGGACTTGTCTTGATTCTTAATTAATATGAGGGTTCAGTC
CACTGTGGGCAGTGCCATATCTAACTAGGTAGCCTGGGAGTGTTGAGGAA
AGCTACCTGAATGTTAACCTGCCTGTGAGGGAACTTATTTTTATCTTCCC
CCTTCCCTTTTTCTATCCCTCGGGTTCCGATAGCCTTTTTTGGTTGTTAG
ACGCTTTTGTTGACCTCTACTTCTGCTTGTGTTCAATAACATCCCTGACT
TATTTTATTCTCTCTTTTTCAATCCTCTTTCTTTTTTGCCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_d07.b1 MSMg01no357_d07.b1 CHROMAT_FILE:
MSMg01no357_d07.b1 PHD_FILE: MSMg01no357_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:08 2005
         (476 letters)



>mm_chr1_122059031_122059906
          Length = 876

 Score =  899 bits (465), Expect = 0.0
 Identities = 470/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctacgtgcaaaaactgtctctgaactccatgagctgaactgctgtgaactga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcctctacgtggaaaaactgtctctgaactccatgagctgaactgctgtgaactga 590

                                                                       
Query: 65  actgactctccctgcacagtttcatttcttttctctcctctcaaccagcagagaggagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 actgactctccctgcacagtttcatttcttttctctcctctcaaccagcagagaggagag 530

                                                                       
Query: 125 ctgacactgtaccctaacactcatcaacacccagtgcactgtcctgtccccacaggaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctgacactgtaccctaacactcatcaacacccagtgcactgtcctgtccccacaggaaag 470

                                                                       
Query: 185 acaagaaccaggggaccagggtaggtgaaaagcctttcctaagcgagaaaaggcaactgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 acaagaaccaggggaccagggtaggtgaaaagcctttcctaagcgagaaaaggcaactgt 410

                                                                       
Query: 245 tagacagccacacccacccaaagaacctctccacacctgtcaggacccactgcttctgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tagacagccacacccacccaaagaacctctccacacctgtcaggacccactgcttctgca 350

                                                                       
Query: 305 atttcttcctgtttttctgccagttcccctgaatatgcacacatgctgtgatgcaatggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atttcttcctgtttttctgccagttcccctgaatatgcacacatgctgtgatgcaatggg 290

                                                                       
Query: 365 gttaatgagtcagtaattgaatgatgcattttctaccccagtgagtctctgatggttaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gttaatgagtcagtaattgaatgatgcattttctaccccagtgagtctctgatggttaca 230

                                                               
Query: 425 ctagcttattaaaataatattgtggngtgtatgtatgtgtgtatgtatgtat 476
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 229 ctagcttattaaaataatattgtggtgtgtatgtatgtgtgtatgtatgtat 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_d07.g1 MSMg01no357_d07.g1 CHROMAT_FILE:
MSMg01no357_d07.g1 PHD_FILE: MSMg01no357_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:08 2005
         (423 letters)



>mm_chr1_121844829_121845651
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcttggtcttcaaactgagagcagcggatgctcttaccgctccgccagctctccagcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aatcttggtcttcaaactgagagcagcggatgctcttaccgctccgccagttctccagcc 260

                                                                       
Query: 61  tgcacttgtttcttgagacagtctcgagctcagtgtggtgctcgctgatttgaatagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacttgtttcttgagacagtctcgagctcagtgtggtgctcgctgatttgaatagacc 320

                                                                       
Query: 121 atatctccagggctataggtatatgccaccatctgacgtttttatgtgggtgttgaactc 180
            |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 321 gtatctccagggctataggtatatgccaccatctgacatttttatgtgggtattgaactc 380

                                                                       
Query: 181 aggtcttcaagcttgcatggcaagcactttaccaaccaagacatctccccagacagtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtcttcaagcttgcatggcaagcactttaccaaccaagacatctccccagacagtaat 440

                                                                       
Query: 241 gataagtttcggcattttatttgcaattttgtagtgtcctagttagctttagcttgtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataagtttcggcattttatttgcaattttgtagtgtcctagttagctttagcttgtcac 500

                                                                       
Query: 301 agcctagtgttatctgagaagacagtctcagctgaagaatttcctagatcaggctggcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctagtgttatctgagaagacagtctcagctgaagaatttcctagatcaggctggcct 560

                                                                       
Query: 361 gtgggcaggtatatgtgggtagggggacttgtcttgattcttaattaatatgagggttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggcaggtatatgtgggtagggggacttgtcttgattcttaattaatatgagggttca 620

              
Query: 421 gtc 423
           |||
Sbjct: 621 gtc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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