BAC Information

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BAC

Clone NameMSMg01-357F03
Chromosome1 (Build37)
Map Location 69,810,333 - 69,875,021
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357F03.T7 (MSMg01no357_f03.b1)MSMg01-357F03.TJ (MSMg01no357_f03.g1)
ACCAG467251AG467252
length740744
length of high quality
(start - end)		591 (45 - 635)572 (76 - 647)
definitionCHROMAT_FILE: MSMg01no357_f03.b1 PHD_FILE: MSMg01no357_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:17 2005CHROMAT_FILE: MSMg01no357_f03.g1 PHD_FILE: MSMg01no357_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,874,525 - 69,875,021)(69,810,333 - 69,810,904)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAGGAAGAACACTGGAAACCCTCATATTTGGTACAGATTAAATT
AGACATAATAACATGATTTTTTTAAACTTTAAAGTGAACATTCTGAAACA
GATTATAAAGATTCATTTATGACACTAAGGCAGCCCACATTTTTTCAAAT
TGATTTCAAGACTTAACTCCTATAAAAATAATTTTTATCCAATATAATAC
TACATATTTTCTGCTTAACTGAGCCTGTTAAAGCTCCCAAAATGAATCAC
TGCTGGATCTATGAGATCTTGAATTTAAAAACAAGATACTAAACCGGCCA
TGGTGGCGCATGCCTTTAATCCCAGCAGAAGCAGAGGCAGGCGGATTTCT
GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGGACAGCTAGGGC
TACACAGAGAAACCCTGTCTCAAAACAAAACAAAACAAAACACAACAAAA
CAAAAACAAAACCAATCCAAACAAAACAAACAAACAACAAAAACCCATAC
TATAACTATTCCAATAATAATAGTAATAGATTTTTTTACTGTCTTTAACA
TCTTTATAGATAGCCATTTTTCATTTATCTATTGTATGTATGTGGCTCTT
ATTTCCAAACACTGAGCATTAATCCAGAATTTCCTATCTAGAGAAGAGAA
AGCTAAAGACTTACAAAAGAGTTAATGAAACTAATTATAC

AAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGAACACAAGCTGTCCCTTAA
TGCTTCGGGGCAAGCTACGTGAAGCACGCATTGACATTTCGTATAATAGT
AGGCAGAGTCTTGCCTATTAAAACTTCAGAAAAGCATGCCCAGAACTGAA
AATTTGTCAGAGGCAGCCCGGTGGGGTAGCAACAGACGGAGAAAAATGTT
TTGACATCAGCCATGTGAGAGCAAGTGGAAGTGTCTCTGTGTTGGGTTAG
TTTCACACACAATATCAGGCAGTTGATTTTAGTAACTCTTAGGATCATAC
TGGCAGATTTTAGTGCAGTGAATTGAAATCAAGAAGCAATTATGATTACT
ACAACCTTAAGGGGACAGTCACACGTTTGTGCTTGAGTGTTGAGACTATG
GAATGAAATCTGACCCTCTAGATATGAGCAAGTATGTTTGAGAATCCTTC
ACTGAAGGAACTCAAATTCCCCTATTGATGAATGCTCAGTGATACTGCCT
ACAGTGTACCTTTTCTTTTCCCTAAAGGAACATTTAACCCAGATCCATCA
TGGACATATAACTCTGTAAGATAATATGAATTAATTAATTATGAAAAATG
AAATTGAAACATTGCAATCACTCCAAATATATTTCACATCCAAAGCTCCT
ATTTAAAAATATGCTTGAAAAAGTGTGTGTGTGGAGTTGATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_f03.b1 MSMg01no357_f03.b1 CHROMAT_FILE:
MSMg01no357_f03.b1 PHD_FILE: MSMg01no357_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:17 2005
         (591 letters)



>mm_chr1_69874525_69875515
          Length = 991

 Score =  953 bits (493), Expect = 0.0
 Identities = 496/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactaggaagaacactggaaaccctcatatttggtacagattaaattagacata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggaattcactaggaagaacactggaaaccctcatatttggtacagattaaattagacata 438

                                                                       
Query: 64  ataacatgatttttttaaactttaaagtgaacattctgaaacagattataaagattcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ataacatgatttttttaaactttaaagtgaacattctgaaacagattataaagattcatt 378

                                                                       
Query: 124 tatgacactaaggcagcccacattttttcaaattgatttcaagacttaactcctataaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatgacactaaggcagcccacattttttcaaattgatttcaagacttaactcctataaaa 318

                                                                       
Query: 184 ataatttttatccaatataatactacatattttctgcttaactgagcctgttaaagctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ataatttttatccaatataatactacatattttctgcttaactgagcctgttaaagctcc 258

                                                                       
Query: 244 caaaatgaatcactgctggatctatgagatcttgaatttaaaaacaagatactaaaccgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaaatgaatcactgctggatctatgagatcttgaatttaaaaacaagatactaaaccgg 198

                                                                       
Query: 304 ccatggtggcgcatgcctttaatcccagcagaagcagaggcaggcggatttctgagttcg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccatggtggcgcatgcctttaatcccagcagaagcagaggcaggcggatttctgagttcg 138

                                                                       
Query: 364 aggccagcctggtctacaaagtgagtttcaggacagctagggctacacagagaaaccctg 423
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 137 aggccagcctggtctacaaagtaagtttcaggacagctagggctacacagagaaaccctg 78

                                                                       
Query: 424 tctcaaaacaaaacaaaacaaaacacaacaaaacaaaaacaaaaccaatccaaacaaaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tctcaaaacaaaacaaaacaaaacacaacaaaacaaaaacaaaaccaatccaaacaaaac 18

                            
Query: 484 aaacaaacaacaaaaac 500
           |||||||||||||||||
Sbjct: 17  aaacaaacaacaaaaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_f03.g1 MSMg01no357_f03.g1 CHROMAT_FILE:
MSMg01no357_f03.g1 PHD_FILE: MSMg01no357_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:17 2005
         (572 letters)



>mm_chr1_69810133_69811104
          Length = 972

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggaacacaagctgtcccttaatgcttcggggcaagctacgtgaagcacgcattgac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cagaggaacacaagctgtcccttaatgcttcagggcaagctacgtgaagcacgcattgac 260

                                                                       
Query: 61  atttcgtataatagtaggcagagtcttgcctattaaaacttcagaaaagcatgcccagaa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atttcgtataatagtaggcagagtcttgcctattaaaacttcggaaaagcatgcccagaa 320

                                                                       
Query: 121 ctgaaaatttgtcagaggcagcccggtggggtagcaacagacggagaaaaatgttttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaaatttgtcagaggcagcccggtggggtagcaacagacggagaaaaatgttttgac 380

                                                                       
Query: 181 atcagccatgtgagagcaagtggaagtgtctctgtgttgggttagtttcacacacaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagccatgtgagagcaagtggaagtgtctctgtgttgggttagtttcacacacaatat 440

                                                                       
Query: 241 caggcagttgattttagtaactcttaggatcatactggcagattttagtgcagtgaattg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggcagttgattttagtgactcttaggatcatactggcagattttagtgcagtgaattg 500

                                                                       
Query: 301 aaatcaagaagcaattatgattactacaaccttaaggggacagtcacacgtttgtgcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcaagaagcaattatgattactacaaccttaaggggacagtcacacgtttgtgcttg 560

                                                                       
Query: 361 agtgttgagactatggaatgaaatctgaccctctagatatgagcaagtatgtttgagaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgttgagactatggaatgaaatctgaccctctagatatgagcaagtatgtttgagaat 620

                                                                       
Query: 421 ccttcactgaaggaactcaaattcccctattgatgaatgctcagtgatactgcctacagt 480
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 ccatcactgaaggaactcaaattcccctattgatgaatgctcaatgatactgcctacagt 680

                                                                       
Query: 481 gtaccttttcttttccctaaaggaacatttaacccagatccatcatggacatataactct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaccttttcttttccctaaaggaacatttaacccagatccatcatggacatataactct 740

                                           
Query: 541 gtaagataatatgaattaattaattatgaaaa 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 gtaagataatatgaattaattaattatgaaaa 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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