TCATAATTTGCNNCCGCTATACAACTCACTTTTCAAAGAGGATCCGCGGA
ATTCCATCCTTTTCCTTTGGGGAGATAGCTCCTGATGCCTGCTCATCCTG
TGCAAACTAAACCCANNGGGTAGAACCACAATGNNAAGGCAATCTTAACT
CNCTCCAGTAAAAAACCACAGGCCTGATCTGTCCCCCAGGNCATCTGGAT
CTCATTGCTCATANCACTTGANCCCATANANAAAAACCCAAAATGCCACC
CCTGGAAATCCAGNCTGAAAGGAGAGGACGGAGGGGGGGAGGGGGGGGGC
GGGGGGGGGGGGGGGGGGGGGGGGGGCGGCGGGGGCGGGGGGGGNAAAAA
AAANNNNNNNNNANNNNNNNNNNNNANAANAAGGAGGGGGGGGGGCCTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NANNNNNNNNNNNNNNNTNNTNNNTNTNNNNNTNNNNNNNNNNNNNNNNN
NTNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNTTTTTTNTTTTNTTTNTT
TTNNTNNNTTNNNNNTTTTTNNNNNTNTNNNNTTNNTTTTNNTTNTTTTT
NTTTTNNTTTTTTTTNTTTTTNNNNNTNNNTTTTTNNNTNNTTTTTTTTT
TTTNNATTTTATTTATTAAATTTTTATATATATAGTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGTTATCTTCAGAAGTATCACA
TATTGCTGTTGCTGATCACTGCCAAACCCTTTGGAGAGAAAGAGCACTTT
GGATATTTTAAGGAGTTTTTGCTCTCGGAGGATGAGACAAGAGGTTTTAA
TGCAAGGTCCAGAGCATCCTGGGATATATAATGTCTTGGTAAAGGATTTA
TTCTGGATCACATTTCAAGACATAGCCCATCACAGCGACAGGGAAATGAA
GGCAGCTGGAGCTGGAAGCAGCTAGCTGCTTTGGCTTCACAGTCTGAAGG
AAGAAAGAATGAGTACAAACTCAGCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCGAGACGGTGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCA
CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTCCCT
CCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCTGCACATTCTC
TTTTTTATGCAGACTGTGACTCCTGCATAGGGAACAGTGTCACCTCCATT
CGCTTAATCAAAAGGATTCACTACGGGTATTCCCAGAGCCCATCTCCCCA
GGGATTTCTCAATGTGTGTGTGTGTGTGCGTGTGTGACAAAAATATCACG
TATTCTTGTTTCTTTTTACTTTCCCTTTTCTATTTTCTTTCTGG

Query= MSMg01no357_n03.g1 MSMg01no357_n03.g1 CHROMAT_FILE:
MSMg01no357_n03.g1 PHD_FILE: MSMg01no357_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:55 2005
         (511 letters)



>mm_chr1_180293442_180294352
          Length = 911

 Score =  919 bits (475), Expect = 0.0
 Identities = 508/533 (95%), Gaps = 22/533 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgttatcttcagaagtatcacatattgctgttgctgatcactgccaaaccctttggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttatcttcagaagtatcacatattgctgttgctgatcactgccaaaccctttggag 260

                                                                       
Query: 61  agaaagagcactttggatattttaaggagtttttgctctcggaggatgagacaagaggtt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agaaagagcactttggatattttaaggagtttttgctctcgaaggatgagacaagaggtt 320

                                                                       
Query: 121 ttaatgcaaggtccagagcatcctgggatatataatgtcttggtaaaggatttattctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatgcaaggtccagagcatcctgggatatataatgtcttggtaaaggatttattctgg 380

                                                                       
Query: 181 atcacatttcaagacatagcccatcacagcgacagggaaatgaaggcagctggagctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcacatttcaagacatagcccatcacagcgacagggaaatgaaggcagctggagctgga 440

                                                                       
Query: 241 agcagctagctgctttggcttcacagtctgaaggaagaaagaatgagtacaaactcagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagctagctgctttggcttcacagtctgaaggaagaaagaatgagtacaaactcagct 500

                                                                       
Query: 301 c----------------------tctctctctctctctctctctctctctttcgagacgg 338
           |                      ||||||||||||||||||||||||||||||||||| |
Sbjct: 501 cacactctctctctctctctctctctctctctctctctctctctctctctttcgagacag 560

                                                                       
Query: 339 tgtttctctgtgtagccctggctgtcctagaactcactctgtagaccaggctggcctcga 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttctctgtgtagccctggctgtcctagaactcactctgtagaccaggctggcctcga 620

                                                                       
Query: 399 actcagaaatccacctgcctctccctcccaagtgctgggattaaaggcgtgcgccaccac 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcagaaatccacctgcctctccctcccaagtgctgggattaaaggcgtgcgccaccac 680

                                                                
Query: 459 tgccctgcacattctcttttttatgcagactgtgactcctgcatagggaacag 511
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccctgcacgttctcttttttatgcagactgtgactcctgcatagggaacag 733



 Score = 58.7 bits (30), Expect = 9e-13
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 299 ctctctctctctctctctctctctctctct 328
           ||||||||||||||||||||||||||||||
Sbjct: 858 ctctctctctctctctctctctctctctct 829



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 299 ctctctctctctctctctctctctctctc 327
           |||||||||||||||||||||||||||||
Sbjct: 856 ctctctctctctctctctctctctctctc 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)